Description : (at1g53830 : 536.0) encodes a pectin methylesterase; pectin methylesterase 2 (PME2); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: extracellular region, plant-type cell wall; EXPRESSED IN: sepal, flower, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase 3 (TAIR:AT3G14310.1); Has 3028 Blast hits to 2957 proteins in 336 species: Archae - 6; Bacteria - 620; Metazoa - 1; Fungi - 201; Plants - 2174; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). & (o04886|pme1_citsi : 517.0) Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin methylesterase) (PE) - Citrus sinensis (Sweet orange) & (reliability: 1072.0) & (original description: no original description)
Gene families : OG_42_0000066 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000066_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00029101-RA | |
Cluster | HCCA clusters: Cluster_10 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_27968 | No alias | pectinesterasepectinesterase inhibitor 18 | 0.03 | Orthogroups_2024-Update | |
A4A49_30246 | No alias | putative pectinesterasepectinesterase inhibitor 28 | 0.03 | Orthogroups_2024-Update | |
A4A49_38041 | No alias | putative pectinesterasepectinesterase inhibitor 36 | 0.02 | Orthogroups_2024-Update | |
At4g00190 | No alias | Putative pectinesterase/pectinesterase inhibitor 38... | 0.03 | Orthogroups_2024-Update | |
Bradi2g52140 | No alias | methylesterase PCR A | 0.03 | Orthogroups_2024-Update | |
Brara.A03198.1 | No alias | EC_3.1 hydrolase acting on ester bond & pectin methylesterase | 0.02 | Orthogroups_2024-Update | |
Brara.D00218.1 | No alias | EC_3.1 hydrolase acting on ester bond & pectin methylesterase | 0.02 | Orthogroups_2024-Update | |
Brara.D02731.1 | No alias | EC_3.1 hydrolase acting on ester bond & pectin methylesterase | 0.04 | Orthogroups_2024-Update | |
Brara.I03256.1 | No alias | EC_3.1 hydrolase acting on ester bond & pectin methylesterase | 0.04 | Orthogroups_2024-Update | |
Brara.J00839.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Glyma.02G008400 | No alias | Plant invertase/pectin methylesterase inhibitor superfamily | 0.03 | Orthogroups_2024-Update | |
Glyma.08G044000 | No alias | Plant invertase/pectin methylesterase inhibitor superfamily | 0.05 | Orthogroups_2024-Update | |
Glyma.09G042100 | No alias | Plant invertase/pectin methylesterase inhibitor superfamily | 0.02 | Orthogroups_2024-Update | |
Glyma.09G077100 | No alias | Plant invertase/pectin methylesterase inhibitor superfamily | 0.03 | Orthogroups_2024-Update | |
Glyma.13G115300 | No alias | Plant invertase/pectin methylesterase inhibitor superfamily | 0.04 | Orthogroups_2024-Update | |
LOC_Os01g13320 | No alias | pectinesterase, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os01g21034 | No alias | pectinesterase, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os02g54190 | No alias | pectinesterase, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_10434002g0010 | No alias | (at3g49220 : 399.0) Plant invertase/pectin... | 0.03 | Orthogroups_2024-Update | |
MA_10434031g0010 | No alias | (o04886|pme1_citsi : 471.0) Pectinesterase-1 precursor... | 0.05 | Orthogroups_2024-Update | |
MA_130858g0010 | No alias | (at5g53370 : 416.0) pectin methylesterase PCR fragment F... | 0.04 | Orthogroups_2024-Update | |
MA_354248g0010 | No alias | (at3g49220 : 511.0) Plant invertase/pectin... | 0.05 | Orthogroups_2024-Update | |
MA_51464g0010 | No alias | (at4g02330 : 470.0) ATPMEPCRB; FUNCTIONS IN:... | 0.03 | Orthogroups_2024-Update | |
MA_8928694g0010 | No alias | (at3g43270 : 214.0) Plant invertase/pectin... | 0.04 | Orthogroups_2024-Update | |
PSME_00012293-RA | No alias | (o04887|pme2_citsi : 426.0) Pectinesterase-2 precursor... | 0.04 | Orthogroups_2024-Update | |
PSME_00043969-RA | No alias | (at1g53830 : 497.0) encodes a pectin methylesterase;... | 0.04 | Orthogroups_2024-Update | |
PSME_00048380-RA | No alias | (at4g02330 : 476.0) ATPMEPCRB; FUNCTIONS IN:... | 0.04 | Orthogroups_2024-Update | |
Potri.005G022900 | No alias | Plant invertase/pectin methylesterase inhibitor superfamily | 0.03 | Orthogroups_2024-Update | |
Potri.011G135000 | No alias | methylesterase PCR A | 0.03 | Orthogroups_2024-Update | |
Potri.013G013400 | No alias | Plant invertase/pectin methylesterase inhibitor superfamily | 0.02 | Orthogroups_2024-Update | |
Potri.T148200 | No alias | pectin methylesterase 3 | 0.03 | Orthogroups_2024-Update | |
Seita.5G450500.1 | No alias | EC_3.1 hydrolase acting on ester bond & pectin methylesterase | 0.02 | Orthogroups_2024-Update | |
Seita.6G168400.1 | No alias | EC_3.1 hydrolase acting on ester bond & pectin methylesterase | 0.03 | Orthogroups_2024-Update | |
Sobic.007G146300.1 | No alias | EC_3.1 hydrolase acting on ester bond & pectin methylesterase | 0.02 | Orthogroups_2024-Update | |
Solyc02g080220 | No alias | Pectinesterase (AHRD V3.3 *** K4B9P3_SOLLC) | 0.03 | Orthogroups_2024-Update | |
Solyc06g009190 | No alias | Pectinesterase (AHRD V3.3 *** K4C3U9_SOLLC) | 0.03 | Orthogroups_2024-Update | |
Solyc06g051960 | No alias | Pectinesterase (AHRD V3.3 *** K4C5Y2_SOLLC) | 0.05 | Orthogroups_2024-Update | |
Solyc09g075350 | No alias | Pectinesterase (AHRD V3.3 *** K4CVB2_SOLLC) | 0.03 | Orthogroups_2024-Update | |
Sopen01g021780 | No alias | Pectinesterase | 0.03 | Orthogroups_2024-Update | |
Sopen02g024940 | No alias | Pectinesterase | 0.02 | Orthogroups_2024-Update | |
Sopen06g003960 | No alias | Pectinesterase | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004857 | enzyme inhibitor activity | IEA | InterProScan predictions |
MF | GO:0030599 | pectinesterase activity | IEA | InterProScan predictions |
BP | GO:0042545 | cell wall modification | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000287 | magnesium ion binding | IEP | Predicted GO |
CC | GO:0000808 | origin recognition complex | IEP | Predicted GO |
MF | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
MF | GO:0005506 | iron ion binding | IEP | Predicted GO |
CC | GO:0005576 | extracellular region | IEP | Predicted GO |
CC | GO:0005618 | cell wall | IEP | Predicted GO |
CC | GO:0005664 | nuclear origin of replication recognition complex | IEP | Predicted GO |
BP | GO:0006259 | DNA metabolic process | IEP | Predicted GO |
BP | GO:0006260 | DNA replication | IEP | Predicted GO |
BP | GO:0006270 | DNA replication initiation | IEP | Predicted GO |
BP | GO:0006721 | terpenoid metabolic process | IEP | Predicted GO |
BP | GO:0008152 | metabolic process | IEP | Predicted GO |
MF | GO:0008171 | O-methyltransferase activity | IEP | Predicted GO |
MF | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity | IEP | Predicted GO |
MF | GO:0010333 | terpene synthase activity | IEP | Predicted GO |
BP | GO:0016114 | terpenoid biosynthetic process | IEP | Predicted GO |
MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | Predicted GO |
MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Predicted GO |
MF | GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | IEP | Predicted GO |
MF | GO:0016744 | transferase activity, transferring aldehyde or ketonic groups | IEP | Predicted GO |
MF | GO:0016758 | transferase activity, transferring hexosyl groups | IEP | Predicted GO |
MF | GO:0016762 | xyloglucan:xyloglucosyl transferase activity | IEP | Predicted GO |
MF | GO:0016829 | lyase activity | IEP | Predicted GO |
MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Predicted GO |
MF | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates | IEP | Predicted GO |
MF | GO:0020037 | heme binding | IEP | Predicted GO |
CC | GO:0030312 | external encapsulating structure | IEP | Predicted GO |
MF | GO:0030976 | thiamine pyrophosphate binding | IEP | Predicted GO |
MF | GO:0043167 | ion binding | IEP | Predicted GO |
MF | GO:0043169 | cation binding | IEP | Predicted GO |
BP | GO:0044262 | cellular carbohydrate metabolic process | IEP | Predicted GO |
CC | GO:0044454 | nuclear chromosome part | IEP | Predicted GO |
MF | GO:0046527 | glucosyltransferase activity | IEP | Predicted GO |
MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
MF | GO:0046906 | tetrapyrrole binding | IEP | Predicted GO |
MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
MF | GO:0048037 | cofactor binding | IEP | Predicted GO |
CC | GO:0048046 | apoplast | IEP | Predicted GO |
BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
MF | GO:0061731 | ribonucleoside-diphosphate reductase activity | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
MF | GO:1901681 | sulfur compound binding | IEP | Predicted GO |
No external refs found! |