1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00030141-RA

PSME_00030141-RA


Description : (at5g64320 : 301.0) Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 248.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 566.0) & (original description: no original description)


Gene families : OG_42_0022343 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00030141-RA
Cluster HCCA clusters: Cluster_42


Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0050290 sphingomyelin phosphodiesterase D activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 541 590
IPR002885 Pentatricopeptide_repeat 226 274
IPR002885 Pentatricopeptide_repeat 366 415
IPR002885 Pentatricopeptide_repeat 296 345
IPR002885 Pentatricopeptide_repeat 611 658
IPR002885 Pentatricopeptide_repeat 436 485
IPR002885 Pentatricopeptide_repeat 159 186
IPR002885 Pentatricopeptide_repeat 196 221
IPR002885 Pentatricopeptide_repeat 509 539
No external refs found!