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  5. PSME_00031489-RA

PSME_00031489-RA


Description : (at5g11300 : 338.0) mitotic-like cyclin, core cell cycle gene that is expressed only in roots (RT_PCR), portions with mitotic activity only (whole mount in situ).; mitotic-like cyclin 3B from Arabidopsis (CYC3B); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: cyclin a2;1 (TAIR:AT5G25380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p25010|ccnal_dauca : 292.0) G2/mitotic-specific cyclin C13-1 (A-like cyclin) (Fragment) - Daucus carota (Carrot) & (reliability: 666.0) & (original description: no original description)


Gene families : OG_42_0000120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00031489-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
97411 No alias Cyclin A1;1 0.02 Orthogroups_2024-Update
At4g35620 No alias Cyclin-B2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39070] 0.03 Orthogroups_2024-Update
Brara.B00199.1 No alias regulatory protein *(CYCB) of cell cycle 0.02 Orthogroups_2024-Update
Brara.H00423.1 No alias regulatory protein *(CYCA) of cell cycle 0.05 Orthogroups_2024-Update
Glyma.02G277600 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
Glyma.04G001100 No alias Cyclin B2;3 0.04 Orthogroups_2024-Update
Glyma.06G116100 No alias Cyclin A1;1 0.03 Orthogroups_2024-Update
Glyma.07G034100 No alias Cyclin A2;4 0.03 Orthogroups_2024-Update
Glyma.14G037100 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
Glyma.19G127200 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
Kfl00112_0070 kfl00112_0070_v1.... (at1g80370 : 326.0) Cyclin A2;4 (CYCA2;4); CONTAINS... 0.02 Orthogroups_2024-Update
MA_28323g0010 No alias (at5g11300 : 355.0) mitotic-like cyclin, core cell cycle... 0.07 Orthogroups_2024-Update
MA_6619g0010 No alias (at1g44110 : 409.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.07 Orthogroups_2024-Update
MA_88982g0010 No alias (at5g11300 : 380.0) mitotic-like cyclin, core cell cycle... 0.05 Orthogroups_2024-Update
Mp2g25500.1 No alias cyclin (CYCA) 0.02 Orthogroups_2024-Update
Solyc01g009040 No alias cyclinB1_4 0.02 Orthogroups_2024-Update
Solyc02g082820 No alias cyclin B2 0.03 Orthogroups_2024-Update
Solyc03g032190 No alias cyclinB2_7 0.02 Orthogroups_2024-Update
Solyc04g082430 No alias cyclinB2_4 0.02 Orthogroups_2024-Update
Solyc10g078330 No alias B-type cyclin 0.03 Orthogroups_2024-Update
Solyc10g080950 No alias cyclinB1_2 0.02 Orthogroups_2024-Update
Solyc12g088500 No alias cyclin A3_5 0.03 Orthogroups_2024-Update
Solyc12g088520 No alias cyclin A3_3 0.03 Orthogroups_2024-Update
Solyc12g088530 No alias cyclin A3.1 0.03 Orthogroups_2024-Update
Sopen06g024200 No alias Cyclin, N-terminal domain 0.05 Orthogroups_2024-Update
evm.model.contig_2121.3 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_554.3 No alias (q40671|ccnb2_orysa : 240.0) G2/mitotic-specific... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005664 nuclear origin of replication recognition complex IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 353 476
IPR006671 Cyclin_N 185 297
No external refs found!