1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00031682-RA

PSME_00031682-RA


Description : (at4g00990 : 191.0) Transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G11950.1); Has 966 Blast hits to 671 proteins in 113 species: Archae - 0; Bacteria - 8; Metazoa - 538; Fungi - 54; Plants - 301; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). & (reliability: 382.0) & (original description: no original description)


Gene families : OG_42_0000491 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000491_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00031682-RA
Cluster HCCA clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Brara.K01833.1 No alias histone demethylase *(KDM3) 0.04 Orthogroups_2024-Update
Glyma.13G107051 No alias transcription factor jumonji (jmjC) domain-containing protein 0.02 Orthogroups_2024-Update
Glyma.13G247400 No alias Zinc finger, RING-type;Transcription factor... 0.04 Orthogroups_2024-Update
LOC_Os09g22540 No alias transcription factor jumonji, putative, expressed 0.04 Orthogroups_2024-Update
Pp1s26_133V6 No alias jmjc domain containing expressed 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!