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  5. PSME_00032081-RA

PSME_00032081-RA


Description : (p49730|rir2_tobac : 546.0) Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide reductase small subunit) (Ribonucleoside-diphosphate reductase R2 subunit) - Nicotiana tabacum (Common tobacco) & (at3g27060 : 543.0) Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development.; TSO MEANING 'UGLY' IN CHINESE 2 (TSO2); FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, ribonucleoside-diphosphate reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: ribonucleotide reductase 2A (TAIR:AT3G23580.1); Has 9355 Blast hits to 9350 proteins in 2299 species: Archae - 34; Bacteria - 4270; Metazoa - 263; Fungi - 240; Plants - 185; Viruses - 729; Other Eukaryotes - 3634 (source: NCBI BLink). & (reliability: 1086.0) & (original description: no original description)


Gene families : OG_42_0002879 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002879_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00032081-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Cre12.g491050 No alias ribonucleotide reductase 2A 0.02 Orthogroups_2024-Update
Glyma.16G056300 No alias Ferritin/ribonucleotide reductase-like family protein 0.02 Orthogroups_2024-Update
Glyma.19G091400 No alias Ferritin/ribonucleotide reductase-like family protein 0.04 Orthogroups_2024-Update
Kfl00286_0070 kfl00286_0070_v1.1 (p49730|rir2_tobac : 528.0) Ribonucleoside-diphosphate... 0.02 Orthogroups_2024-Update
MA_10430569g0010 No alias (p49730|rir2_tobac : 535.0) Ribonucleoside-diphosphate... 0.06 Orthogroups_2024-Update
MA_1482g0010 No alias (p49730|rir2_tobac : 556.0) Ribonucleoside-diphosphate... 0.04 Orthogroups_2024-Update
Sopen02g038790 No alias Ribonucleotide reductase, small chain 0.02 Orthogroups_2024-Update
evm.model.contig_2048.10 No alias (at3g23580 : 461.0) Encodes one of the 3 ribonucleotide... 0.04 Orthogroups_2024-Update
evm.model.tig00000383.42 No alias (at3g27060 : 431.0) Encodes one of the 3 ribonucleotide... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005664 nuclear origin of replication recognition complex IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Predicted GO
BP GO:0015689 molybdate ion transport IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000358 RNR_small_fam 44 310
No external refs found!