1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00032344-RA

PSME_00032344-RA


Description : (at2g34930 : 350.0) disease resistance family protein / LRR family protein; INVOLVED IN: signal transduction, defense response to fungus, defense response; LOCATED IN: cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT4G20140.1); Has 135121 Blast hits to 32840 proteins in 1181 species: Archae - 56; Bacteria - 8201; Metazoa - 34800; Fungi - 1569; Plants - 79859; Viruses - 2; Other Eukaryotes - 10634 (source: NCBI BLink). & (p93194|rpk1_iponi : 273.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 700.0) & (original description: no original description)


Gene families : OG_42_0000172 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000172_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00032344-RA
Cluster HCCA clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Bradi1g31971 No alias disease resistance family protein / LRR family protein 0.02 Orthogroups_2024-Update
Bradi1g44425 No alias disease resistance family protein / LRR family protein 0.03 Orthogroups_2024-Update
Bradi2g42820 No alias disease resistance family protein / LRR family protein 0.03 Orthogroups_2024-Update
Bradi3g05292 No alias disease resistance family protein / LRR family protein 0.03 Orthogroups_2024-Update
Glyma.10G228000 No alias disease resistance family protein / LRR family protein 0.02 Orthogroups_2024-Update
Glyma.10G228600 No alias disease resistance family protein / LRR family protein 0.03 Orthogroups_2024-Update
Glyma.13G050500 No alias disease resistance family protein / LRR family protein 0.03 Orthogroups_2024-Update
Glyma.16G174600 No alias disease resistance family protein / LRR family protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G004130.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G002630.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os02g17400 No alias leucine rich repeat protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g22920 No alias Leucine rich repeat N-terminal domain containing... 0.02 Orthogroups_2024-Update
LOC_Os11g35450 No alias leucine-rich repeat receptor protein kinase EXS... 0.03 Orthogroups_2024-Update
LOC_Os11g35960 No alias Leucine rich repeat N-terminal domain containing... 0.02 Orthogroups_2024-Update
LOC_Os11g36120 No alias receptor-like protein kinase precursor, putative, expressed 0.02 Orthogroups_2024-Update
Potri.010G105800 No alias disease resistance family protein / LRR family protein 0.02 Orthogroups_2024-Update
Seita.2G010100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G154700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.8G237800.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.004G017000.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G127800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.007G080780.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G012900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.010G130700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc07g008620 No alias EIX receptor 1 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP Predicted GO
MF GO:0004474 malate synthase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006097 glyoxylate cycle IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009617 response to bacterium IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0042742 defense response to bacterium IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:0046487 glyoxylate metabolic process IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 1478 1536
IPR001611 Leu-rich_rpt 959 1017
IPR001611 Leu-rich_rpt 1667 1723
IPR001611 Leu-rich_rpt 1404 1464
IPR001611 Leu-rich_rpt 697 757
IPR001611 Leu-rich_rpt 549 607
IPR001611 Leu-rich_rpt 475 535
IPR013210 LRR_N_plant-typ 158 196
IPR013210 LRR_N_plant-typ 1087 1125
IPR001611 Leu-rich_rpt 1259 1280
No external refs found!