Description : (at2g27610 : 637.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 54594 Blast hits to 14874 proteins in 305 species: Archae - 2; Bacteria - 30; Metazoa - 158; Fungi - 263; Plants - 53396; Viruses - 0; Other Eukaryotes - 745 (source: NCBI BLink). & (q76c99|rf1_orysa : 135.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1274.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00032414-RA | |
Cluster | HCCA clusters: Cluster_42 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
82058 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
At2g36730 | No alias | Pentatricopeptide repeat-containing protein At2g36730... | 0.04 | Orthogroups_2024-Update | |
Bradi1g36010 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi1g47170 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi1g53600 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
Bradi4g40340 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.16G206000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G081690.1 | No alias | RNA editing factor *(OTP86) | 0.03 | Orthogroups_2024-Update | |
MA_322292g0010 | No alias | (at4g18750 : 684.0) Encodes a pentatricopeptide (PPR)... | 0.05 | Orthogroups_2024-Update | |
MA_465411g0010 | No alias | (at4g18750 : 483.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_87646g0010 | No alias | (at3g02330 : 723.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_89214g0010 | No alias | (at1g11290 : 690.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
MA_9354530g0010 | No alias | (at1g11290 : 613.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00013800-RA | No alias | (at2g03880 : 405.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
Seita.7G324400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.8G017200.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Sobic.003G336400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.003G433600.1 | No alias | RNA editing factor *(OTP72) | 0.03 | Orthogroups_2024-Update | |
Sopen01g038950 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen07g017190 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen09g004810 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
Sopen11g009180 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 687 | 805 |
IPR002885 | Pentatricopeptide_repeat | 186 | 210 |
IPR002885 | Pentatricopeptide_repeat | 84 | 106 |
IPR002885 | Pentatricopeptide_repeat | 654 | 683 |
IPR002885 | Pentatricopeptide_repeat | 387 | 410 |
IPR002885 | Pentatricopeptide_repeat | 488 | 510 |
IPR002885 | Pentatricopeptide_repeat | 312 | 359 |
IPR002885 | Pentatricopeptide_repeat | 514 | 561 |
IPR002885 | Pentatricopeptide_repeat | 866 | 912 |
IPR002885 | Pentatricopeptide_repeat | 211 | 258 |
IPR002885 | Pentatricopeptide_repeat | 416 | 460 |
IPR002885 | Pentatricopeptide_repeat | 109 | 157 |
IPR002885 | Pentatricopeptide_repeat | 9 | 56 |
No external refs found! |