1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00032492-RA

PSME_00032492-RA


Description : (at2g26560 : 257.0) Encodes a lipid acyl hydrolase with wide substrate specificity that accumulates upon infection by fungal and bacterial pathogens. Protein is localized in the cytoplasm in healthy leaves, and in membranes in infected cells. Plays a role in cell death and differentially affects the accumulation of oxylipins. Contributes to resistance to virus.; phospholipase A 2A (PLA2A); FUNCTIONS IN: lipase activity, nutrient reservoir activity; INVOLVED IN: in 6 processes; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (TAIR:AT4G37070.2); Has 2114 Blast hits to 2104 proteins in 375 species: Archae - 0; Bacteria - 479; Metazoa - 231; Fungi - 198; Plants - 897; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink). & (p11768|pat3_soltu : 203.0) Patatin class 1 precursor (Patatin class I) (Potato tuber protein) - Solanum tuberosum (Potato) & (reliability: 514.0) & (original description: no original description)


Gene families : OG_42_0000167 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000167_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00032492-RA
Cluster HCCA clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
A4A49_03126 No alias patatin-like protein 3 0.03 Orthogroups_2024-Update
A4A49_11197 No alias patatin-like protein 2 0.02 Orthogroups_2024-Update
A4A49_37692 No alias putative inactive patatin-3-kuras 1 0.03 Orthogroups_2024-Update
A4A49_62621 No alias putative inactive patatin-3-kuras 1 0.02 Orthogroups_2024-Update
Bradi3g37980 No alias phospholipase A 2A 0.03 Orthogroups_2024-Update
GRMZM2G034271 No alias phospholipase A 2A 0.02 Orthogroups_2024-Update
Glyma.06G037900 No alias phospholipase A 2A 0.02 Orthogroups_2024-Update
Glyma.11G056900 No alias Acyl transferase/acyl hydrolase/lysophospholipase... 0.03 Orthogroups_2024-Update
HORVU7Hr1G113080.1 No alias phospholipase-A2 *(pPLA2-II)) 0.03 Orthogroups_2024-Update
LOC_Os08g37180 No alias patatin, putative, expressed 0.02 Orthogroups_2024-Update
MA_10436005g0010 No alias (at2g26560 : 305.0) Encodes a lipid acyl hydrolase with... 0.04 Orthogroups_2024-Update
PSME_00027057-RA No alias (at2g26560 : 338.0) Encodes a lipid acyl hydrolase with... 0.04 Orthogroups_2024-Update
PSME_00040692-RA No alias (at5g43590 : 153.0) Acyl transferase/acyl... 0.03 Orthogroups_2024-Update
Potri.002G128000 No alias phospholipase A 2A 0.04 Orthogroups_2024-Update
Potri.T051200 No alias Acyl transferase/acyl hydrolase/lysophospholipase... 0.03 Orthogroups_2024-Update
Seita.6G183800.1 No alias phospholipase-A2 *(pPLA2-II)) 0.03 Orthogroups_2024-Update
Sobic.005G186100.1 No alias phospholipase-A2 *(pPLA2-II)) 0.03 Orthogroups_2024-Update
Sobic.005G186400.1 No alias phospholipase-A2 *(pPLA2-II)) 0.02 Orthogroups_2024-Update
Sobic.007G158600.1 No alias phospholipase-A2 *(pPLA2-II)) 0.02 Orthogroups_2024-Update
Solyc02g090490 No alias Patatin (AHRD V3.3 *** K4BCJ8_SOLLC) 0.02 Orthogroups_2024-Update
Solyc03g044710 No alias Patatin (AHRD V3.3 *** K4BG88_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004474 malate synthase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006097 glyoxylate cycle IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009617 response to bacterium IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0042742 defense response to bacterium IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:0046487 glyoxylate metabolic process IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002641 PNPLA_dom 10 213
No external refs found!