PSME_00034245-RA


Description : (at1g05260 : 254.0) Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.; RARE COLD INDUCIBLE GENE 3 (RCI3); FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to desiccation, response to cold, hyperosmotic salinity response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G21770.1); Has 4433 Blast hits to 4402 proteins in 259 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 76; Plants - 4304; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). & (p37834|per1_orysa : 229.0) Peroxidase 1 precursor (EC 1.11.1.7) - Oryza sativa (Rice) & (reliability: 508.0) & (original description: no original description)


Gene families : OG_42_0000175 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000175_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00034245-RA
Cluster HCCA clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
232728 No alias Peroxidase superfamily protein 0.02 Orthogroups_2024-Update
A4A49_36207 No alias peroxidase 3 0.03 Orthogroups_2024-Update
Bradi1g59550 No alias Peroxidase superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g13190 No alias Peroxidase superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g20850 No alias Peroxidase superfamily protein 0.04 Orthogroups_2024-Update
Mp4g05440.1 No alias Peroxidase 39 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp5g13710.1 No alias Peroxidase 30 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp7g14900.1 No alias Peroxidase 2 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
PSME_00022703-RA No alias (at3g01190 : 350.0) Peroxidase superfamily protein;... 0.04 Orthogroups_2024-Update
Seita.3G347500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G049800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen05g027240 No alias Peroxidase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEA InterProScan predictions
BP GO:0006979 response to oxidative stress IEA InterProScan predictions
MF GO:0020037 heme binding IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002016 Haem_peroxidase_pln/fun/bac 57 274
No external refs found!