PSME_00034426-RA


Description : (at1g01040 : 454.0) Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.; dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.1). & (reliability: 908.0) & (original description: no original description)


Gene families : OG_42_0000292 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000292_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00034426-RA
Cluster HCCA clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
A4A49_29656 No alias endoribonuclease dicer-like 3b 0.05 Orthogroups_2024-Update
Bradi1g15440 No alias dicer-like 2 0.02 Orthogroups_2024-Update
GRMZM2G001631 No alias dicer-like 2 0.02 Orthogroups_2024-Update
Glyma.04G057400 No alias dicer-like 3 0.04 Orthogroups_2024-Update
LOC_Os03g02970 No alias Dicer, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g25250 No alias endoribonuclease Dicer, putative, expressed 0.01 Orthogroups_2024-Update
Potri.006G218850 No alias dicer-like 3 0.02 Orthogroups_2024-Update
Solyc06g048960 No alias Dicer-like 2a 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000999 RNase_III_dom 203 315
IPR000999 RNase_III_dom 2 126
No external refs found!