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  5. PSME_00035534-RA

PSME_00035534-RA


Description : (at5g12870 : 162.0) Member of the R2R3 factor gene family.; myb domain protein 46 (MYB46); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 83 (TAIR:AT3G08500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p20027|myb3_horvu : 154.0) Myb-related protein Hv33 - Hordeum vulgare (Barley) & (reliability: 324.0) & (original description: no original description)


Gene families : OG_42_0000002 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00035534-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
At5g52260 No alias MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LTJ5] 0.02 Orthogroups_2024-Update
LOC_Os01g07450 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g48010 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00005364-RA No alias (at1g22640 : 189.0) MYB-type transcription factor (MYB3)... 0.05 Orthogroups_2024-Update
PSME_00018833-RA No alias (p20025|myb38_maize : 246.0) Myb-related protein Zm38 -... 0.03 Orthogroups_2024-Update
PSME_00031159-RA No alias (at4g38620 : 228.0) Encodes a R2R3 MYB protein which is... 0.03 Orthogroups_2024-Update
PSME_00051072-RA No alias (at4g34990 : 160.0) Member of the R2R3 factor gene... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 56 105
IPR001005 SANT/Myb 111 154
No external refs found!