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  5. Sopen06g006060

Sopen06g006060


Description : AAA domain (Cdc48 subfamily)


Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g006060
Cluster HCCA clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
A4A49_26399 No alias chaperone protein clpb1 0.03 Orthogroups_2024-Update
GRMZM2G060561 No alias casein lytic proteinase B4 0.03 Orthogroups_2024-Update
Glyma.06G202200 No alias heat shock protein 101 0.03 Orthogroups_2024-Update
HORVU1Hr1G076190.4 No alias cytosolic chaperone *(Hsp101) 0.03 Orthogroups_2024-Update
HORVU3Hr1G071120.7 No alias cytosolic chaperone *(Hsp101) 0.04 Orthogroups_2024-Update
HORVU5Hr1G081860.4 No alias chaperone component *(ClpD) of chloroplast Clp-type... 0.02 Orthogroups_2024-Update
LOC_Os02g08490 No alias chaperone protein clpB 1, putative, expressed 0.02 Orthogroups_2024-Update
Mp1g16450.1 No alias cytosolic chaperone (Hsp101) 0.03 Orthogroups_2024-Update
PSME_00000476-RA No alias (q6f2y7|hs101_orysa : 1375.0) Heat shock protein 101 -... 0.02 Orthogroups_2024-Update
PSME_00000477-RA No alias (q6f2y7|hs101_orysa : 1387.0) Heat shock protein 101 -... 0.02 Orthogroups_2024-Update
PSME_00004919-RA No alias (at2g25140 : 1357.0) Encodes ClpB4, which belongs to the... 0.02 Orthogroups_2024-Update
PSME_00030571-RA No alias (q6f2y7|hs101_orysa : 608.0) Heat shock protein 101 -... 0.03 Orthogroups_2024-Update
Potri.015G056900 No alias heat shock protein 101 0.03 Orthogroups_2024-Update
Pp1s62_161V6 No alias chaperone clpb expressed 0.03 Orthogroups_2024-Update
Sobic.006G058100.1 No alias chaperone component *(ClpC) of chloroplast Clp-type... 0.03 Orthogroups_2024-Update
Solyc06g011380 No alias No description available 0.05 Orthogroups_2024-Update
Solyc06g011400 No alias No description available 0.06 Orthogroups_2024-Update
evm.model.contig_3516.2 No alias (at1g74310 : 794.0) Encodes ClpB1, which belongs to the... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 680 849
IPR019489 Clp_ATPase_C 856 935
IPR003959 ATPase_AAA_core 284 415
IPR004176 Clp_N 97 148
IPR004176 Clp_N 176 225
No external refs found!