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Description : (at2g13600 : 422.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 136.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 844.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00036103-RA | |
| Cluster | HCCA clusters: Cluster_210 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi5g13537 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.18G134700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| MA_103698g0030 | No alias | (at3g13770 : 453.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| MA_126037g0020 | No alias | (at4g02750 : 474.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| MA_13057g0010 | No alias | (at4g33170 : 800.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| MA_185098g0010 | No alias | (at3g49170 : 649.0) embryo defective 2261 (EMB2261);... | 0.04 | Orthogroups_2024-Update | |
| MA_28051g0010 | No alias | (at1g11290 : 601.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
| MA_465411g0010 | No alias | (at4g18750 : 483.0) Encodes a pentatricopeptide (PPR)... | 0.05 | Orthogroups_2024-Update | |
| MA_483636g0010 | No alias | (at3g61170 : 684.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update | |
| MA_57048g0010 | No alias | (at3g09040 : 636.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| MA_98224g0010 | No alias | (at4g13650 : 670.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00032006-RA | No alias | (at2g13600 : 367.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00054674-RA | No alias | (at4g33170 : 289.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00057046-RA | No alias | (at4g18750 : 592.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
| Potri.006G245300 | No alias | Function unknown | 0.02 | Orthogroups_2024-Update | |
| Pp1s543_6V6 | No alias | hypothetical protein [Oryza sativa (japonica cultivar-group)] | 0.03 | Orthogroups_2024-Update | |
| Seita.2G068700.1 | No alias | RNA editing factor *(CRR28) | 0.02 | Orthogroups_2024-Update | |
| Seita.3G069000.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.8G017200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G151300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.002G358900.3 | No alias | RNA editing factor *(OTP90) | 0.02 | Orthogroups_2024-Update | |
| Sobic.002G389200.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.003G333200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G336400.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Sobic.007G006800.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.007G208400.1 | No alias | RNA editing factor *(REME1) | 0.02 | Orthogroups_2024-Update | |
| Sobic.010G258600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sopen10g003810 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004427 | inorganic diphosphatase activity | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0009678 | hydrogen-translocating pyrophosphatase activity | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Predicted GO |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 286 | 333 |
| IPR002885 | Pentatricopeptide_repeat | 386 | 433 |
| IPR002885 | Pentatricopeptide_repeat | 101 | 147 |
| IPR002885 | Pentatricopeptide_repeat | 172 | 200 |
| IPR002885 | Pentatricopeptide_repeat | 229 | 255 |
| IPR002885 | Pentatricopeptide_repeat | 257 | 285 |
| IPR002885 | Pentatricopeptide_repeat | 461 | 485 |
| No external refs found! |