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  5. PSME_00036243-RA

PSME_00036243-RA


Description : (at5g11590 : 104.0) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.; TINY2 (TINY2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, embryo, hypocotyl, leaf; EXPRESSED DURING: LP.10 ten leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description)


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00036243-RA
Cluster HCCA clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
409196 No alias related to AP2 11 0.02 Orthogroups_2024-Update
A4A49_16905 No alias ethylene-responsive transcription factor 5 0.03 Orthogroups_2024-Update
A4A49_20188 No alias ethylene-responsive transcription factor erf062 0.02 Orthogroups_2024-Update
A4A49_35008 No alias dehydration-responsive element-binding protein 3 0.02 Orthogroups_2024-Update
A4A49_42088 No alias ethylene-responsive transcription factor 13 0.02 Orthogroups_2024-Update
At3g20310 No alias Ethylene-responsive transcription factor 7... 0.02 Orthogroups_2024-Update
At4g17500 No alias Ethylene-responsive transcription factor 1A... 0.02 Orthogroups_2024-Update
At5g13330 No alias Rap2.6L [Source:UniProtKB/TrEMBL;Acc:A0A178UKL8] 0.02 Orthogroups_2024-Update
Bradi3g24000 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g08380 No alias related to AP2 6l 0.01 Orthogroups_2024-Update
Brara.A00511.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
Brara.H01777.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Brara.J02528.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G057386 No alias ethylene responsive element binding factor 5 0.02 Orthogroups_2024-Update
GRMZM2G425798 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G064000 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G044300 No alias related to AP2 12 0.03 Orthogroups_2024-Update
Glyma.07G250100 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G147200 No alias C-repeat-binding factor 4 0.03 Orthogroups_2024-Update
Glyma.09G242600 No alias ethylene-responsive element binding factor 13 0.03 Orthogroups_2024-Update
Glyma.11G014800 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G142000 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G055710.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
HORVU2Hr1G103660.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G062430.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
HORVU6Hr1G082880.1 No alias subgroup ERF-VII transcription factor & transcription... 0.03 Orthogroups_2024-Update
LOC_Os04g46440 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_65190g0010 No alias (at5g19790 : 91.3) encodes a member of the ERF (ethylene... 0.04 Orthogroups_2024-Update
MA_896002g0010 No alias (at5g11590 : 147.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
PSME_00007285-RA No alias (at5g50080 : 84.0) encodes a member of the ERF (ethylene... 0.04 Orthogroups_2024-Update
PSME_00022946-RA No alias (at5g61890 : 105.0) encodes a member of the ERF... 0.06 Orthogroups_2024-Update
PSME_00037532-RA No alias (at5g61890 : 129.0) encodes a member of the ERF... 0.04 Orthogroups_2024-Update
PSME_00037533-RA No alias (at5g61890 : 108.0) encodes a member of the ERF... 0.05 Orthogroups_2024-Update
PSME_00056324-RA No alias (at5g11590 : 111.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
Potri.001G110500 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G124000 No alias related to AP2 1 0.03 Orthogroups_2024-Update
Potri.004G187001 No alias C-repeat/DRE binding factor 2 0.02 Orthogroups_2024-Update
Potri.005G140900 No alias DREB and EAR motif protein 2 0.02 Orthogroups_2024-Update
Potri.006G138800 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Potri.010G006800 No alias ethylene-responsive element binding protein 0.04 Orthogroups_2024-Update
Potri.010G163900 No alias related to AP2 11 0.03 Orthogroups_2024-Update
Potri.014G099900 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Potri.017G055400 No alias Integrase-type DNA-binding superfamily protein 0.05 Orthogroups_2024-Update
Potri.017G087800 No alias related to AP2 11 0.03 Orthogroups_2024-Update
Potri.019G075600 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.019G131300 No alias cytokinin response factor 4 0.03 Orthogroups_2024-Update
Pp1s127_75V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Pp1s133_11V6 No alias c-repeat binding factor 4 0.01 Orthogroups_2024-Update
Pp1s145_10V6 No alias ap2 erf domain-containing transcription factor 0.03 Orthogroups_2024-Update
Pp1s15_189V6 No alias transcriptional factor 0.01 Orthogroups_2024-Update
Pp1s1_34V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Pp1s340_16V6 No alias ethylene-responsive transcription 0.02 Orthogroups_2024-Update
Pp1s37_293V6 No alias ap2 erf domain-containing transcription factor 0.01 Orthogroups_2024-Update
Pp1s38_262V6 No alias ap2 erf domain-containing transcription factor 0.03 Orthogroups_2024-Update
Pp1s487_24V6 No alias ap2 erf domain-containing transcription factor 0.01 Orthogroups_2024-Update
Pp1s53_80V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Seita.2G112200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.2G138400.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
Seita.4G039700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G188500.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
Sobic.001G039800.1 No alias transcription factor *(CRF) & subgroup ERF-VI... 0.03 Orthogroups_2024-Update
Solyc01g065980 No alias Ethylene Response Factor E.4 0.02 Orthogroups_2024-Update
Solyc01g090560 No alias Ethylene-responsive transcription factor (AHRD V3.3 *-*... 0.02 Orthogroups_2024-Update
Solyc02g093130 No alias AP2/EREBP transcription factor_1 0.03 Orthogroups_2024-Update
Solyc05g052410 No alias Dehydration responsive element binding protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc12g008350 No alias dehydration responsive element binding protein 2 0.03 Orthogroups_2024-Update
Sopen03g039660 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen06g022520 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen07g028150 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen08g004160 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen08g026910 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen12g024030 No alias AP2 domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 286 333
IPR001471 AP2/ERF_dom 36 83
No external refs found!