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Description : (at3g15460 : 416.0) Ribosomal RNA processing Brix domain protein; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT1G52930.1); Has 415 Blast hits to 413 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 66; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). & (reliability: 832.0) & (original description: no original description)
Gene families : OG_42_0004734 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004734_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00037429-RA | |
| Cluster | HCCA clusters: Cluster_3 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Seita.1G215000.1 | No alias | assembly factor involved in ITS1 rRNA removal *(BRIX1) | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004014 | adenosylmethionine decarboxylase activity | IEP | Predicted GO |
| MF | GO:0004386 | helicase activity | IEP | Predicted GO |
| BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
| BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
| BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Predicted GO |
| BP | GO:0006595 | polyamine metabolic process | IEP | Predicted GO |
| BP | GO:0006596 | polyamine biosynthetic process | IEP | Predicted GO |
| BP | GO:0006597 | spermine biosynthetic process | IEP | Predicted GO |
| BP | GO:0006720 | isoprenoid metabolic process | IEP | Predicted GO |
| BP | GO:0006952 | defense response | IEP | Predicted GO |
| BP | GO:0008215 | spermine metabolic process | IEP | Predicted GO |
| BP | GO:0008216 | spermidine metabolic process | IEP | Predicted GO |
| BP | GO:0008295 | spermidine biosynthetic process | IEP | Predicted GO |
| BP | GO:0008299 | isoprenoid biosynthetic process | IEP | Predicted GO |
| BP | GO:0009308 | amine metabolic process | IEP | Predicted GO |
| BP | GO:0009309 | amine biosynthetic process | IEP | Predicted GO |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
| BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
| BP | GO:0042401 | cellular biogenic amine biosynthetic process | IEP | Predicted GO |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
| BP | GO:0044106 | cellular amine metabolic process | IEP | Predicted GO |
| MF | GO:0048037 | cofactor binding | IEP | Predicted GO |
| MF | GO:0050662 | coenzyme binding | IEP | Predicted GO |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
| BP | GO:0097164 | ammonium ion metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007109 | Brix | 63 | 251 |
| No external refs found! |