Description : (p51426|rl39_orysa : 108.0) 60S ribosomal protein L39 - Oryza sativa (Rice) & (at4g31985 : 104.0) Ribosomal protein L39 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L39e, conserved site (InterPro:IPR020083), Ribosomal protein L39e (InterPro:IPR000077); BEST Arabidopsis thaliana protein match is: Ribosomal protein L39 family protein (TAIR:AT3G02190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description)
Gene families : OG_42_0002686 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002686_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00038050-RA | |
Cluster | HCCA clusters: Cluster_117 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
125075 | No alias | Ribosomal protein L39 family protein | 0.04 | Orthogroups_2024-Update | |
228490 | No alias | Ribosomal protein L39 family protein | 0.03 | Orthogroups_2024-Update | |
At3g02190 | No alias | 60S ribosomal protein L39-2... | 0.02 | Orthogroups_2024-Update | |
Bradi1g47501 | No alias | Ribosomal protein L39 family protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G411764 | No alias | Ribosomal protein L39 family protein | 0.06 | Orthogroups_2024-Update | |
LOC_Os02g55370 | No alias | 60S ribosomal protein L39, putative, expressed | 0.05 | Orthogroups_2024-Update | |
LOC_Os06g08320 | No alias | 60S ribosomal protein L39, putative, expressed | 0.04 | Orthogroups_2024-Update | |
Potri.006G188500 | No alias | Ribosomal protein L39 family protein | 0.04 | Orthogroups_2024-Update | |
Potri.018G022100 | No alias | Ribosomal protein L39 family protein | 0.11 | Orthogroups_2024-Update | |
Potri.018G112301 | No alias | Ribosomal protein L39 family protein | 0.06 | Orthogroups_2024-Update | |
Pp1s104_75V6 | No alias | 60s ribosomal protein l39 | 0.16 | Orthogroups_2024-Update | |
Pp1s89_150V6 | No alias | 60S ribosomal protein L39... | 0.2 | Orthogroups_2024-Update | |
Seita.1G351900.1 | No alias | component *(eL39) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
Seita.6G104600.1 | No alias | component *(eL39) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Solyc12g010350 | No alias | 60S ribosomal protein L39 (AHRD V3.3 *** RL39_MAIZE) | 0.17 | Orthogroups_2024-Update | |
Sopen07g001180 | No alias | Ribosomal L39 protein | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005622 | intracellular | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004129 | cytochrome-c oxidase activity | IEP | Predicted GO |
MF | GO:0004576 | oligosaccharyl transferase activity | IEP | Predicted GO |
MF | GO:0004579 | dolichyl-diphosphooligosaccharide-protein glycotransferase activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
CC | GO:0005740 | mitochondrial envelope | IEP | Predicted GO |
CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Predicted GO |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
CC | GO:0008250 | oligosaccharyltransferase complex | IEP | Predicted GO |
MF | GO:0015002 | heme-copper terminal oxidase activity | IEP | Predicted GO |
MF | GO:0015078 | proton transmembrane transporter activity | IEP | Predicted GO |
CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
BP | GO:0015988 | energy coupled proton transmembrane transport, against electrochemical gradient | IEP | Predicted GO |
BP | GO:0015991 | ATP hydrolysis coupled proton transport | IEP | Predicted GO |
CC | GO:0016592 | mediator complex | IEP | Predicted GO |
MF | GO:0016675 | oxidoreductase activity, acting on a heme group of donors | IEP | Predicted GO |
MF | GO:0016676 | oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
CC | GO:0030008 | TRAPP complex | IEP | Predicted GO |
CC | GO:0031967 | organelle envelope | IEP | Predicted GO |
CC | GO:0031975 | envelope | IEP | Predicted GO |
CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
CC | GO:0044422 | organelle part | IEP | Predicted GO |
CC | GO:0044432 | endoplasmic reticulum part | IEP | Predicted GO |
CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
BP | GO:0090662 | ATP hydrolysis coupled transmembrane transport | IEP | Predicted GO |
BP | GO:0099131 | ATP hydrolysis coupled ion transmembrane transport | IEP | Predicted GO |
BP | GO:0099132 | ATP hydrolysis coupled cation transmembrane transport | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000077 | Ribosomal_L39 | 46 | 86 |
No external refs found! |