PSME_00038050-RA


Description : (p51426|rl39_orysa : 108.0) 60S ribosomal protein L39 - Oryza sativa (Rice) & (at4g31985 : 104.0) Ribosomal protein L39 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L39e, conserved site (InterPro:IPR020083), Ribosomal protein L39e (InterPro:IPR000077); BEST Arabidopsis thaliana protein match is: Ribosomal protein L39 family protein (TAIR:AT3G02190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description)


Gene families : OG_42_0002686 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002686_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00038050-RA
Cluster HCCA clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
125075 No alias Ribosomal protein L39 family protein 0.04 Orthogroups_2024-Update
228490 No alias Ribosomal protein L39 family protein 0.03 Orthogroups_2024-Update
At3g02190 No alias 60S ribosomal protein L39-2... 0.02 Orthogroups_2024-Update
Bradi1g47501 No alias Ribosomal protein L39 family protein 0.02 Orthogroups_2024-Update
GRMZM2G411764 No alias Ribosomal protein L39 family protein 0.06 Orthogroups_2024-Update
LOC_Os02g55370 No alias 60S ribosomal protein L39, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os06g08320 No alias 60S ribosomal protein L39, putative, expressed 0.04 Orthogroups_2024-Update
Potri.006G188500 No alias Ribosomal protein L39 family protein 0.04 Orthogroups_2024-Update
Potri.018G022100 No alias Ribosomal protein L39 family protein 0.11 Orthogroups_2024-Update
Potri.018G112301 No alias Ribosomal protein L39 family protein 0.06 Orthogroups_2024-Update
Pp1s104_75V6 No alias 60s ribosomal protein l39 0.16 Orthogroups_2024-Update
Pp1s89_150V6 No alias 60S ribosomal protein L39... 0.2 Orthogroups_2024-Update
Seita.1G351900.1 No alias component *(eL39) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Seita.6G104600.1 No alias component *(eL39) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Solyc12g010350 No alias 60S ribosomal protein L39 (AHRD V3.3 *** RL39_MAIZE) 0.17 Orthogroups_2024-Update
Sopen07g001180 No alias Ribosomal L39 protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0004129 cytochrome-c oxidase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
CC GO:0005740 mitochondrial envelope IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Predicted GO
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
CC GO:0030008 TRAPP complex IEP Predicted GO
CC GO:0031967 organelle envelope IEP Predicted GO
CC GO:0031975 envelope IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000077 Ribosomal_L39 46 86
No external refs found!