PSME_00038239-RA

Description : (at3g49220 : 547.0) Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase PCR fragment F (TAIR:AT5G53370.1); Has 3279 Blast hits to 3212 proteins in 470 species: Archae - 6; Bacteria - 866; Metazoa - 1; Fungi - 193; Plants - 2188; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). & (o04886|pme1_citsi : 476.0) Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin methylesterase) (PE) - Citrus sinensis (Sweet orange) & (reliability: 1094.0) & (original description: no original description)

Gene families : OG_42_0000066 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000066_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00038239-RA
Cluster	HCCA clusters: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
A4A49_27968	No alias	pectinesterasepectinesterase inhibitor 18	0.03	Orthogroups_2024-Update
A4A49_40779	No alias	putative pectinesterasepectinesterase inhibitor 34	0.03	Orthogroups_2024-Update
At4g00190	No alias	Putative pectinesterase/pectinesterase inhibitor 38...	0.03	Orthogroups_2024-Update
At5g53370	No alias	pectin methylesterase PCR fragment F [Source:TAIR;Acc:AT5G53370]	0.03	Orthogroups_2024-Update
Bradi2g52140	No alias	methylesterase PCR A	0.03	Orthogroups_2024-Update
Brara.A00470.1	No alias	EC_3.1 hydrolase acting on ester bond & pectin methylesterase	0.04	Orthogroups_2024-Update
Brara.D00218.1	No alias	EC_3.1 hydrolase acting on ester bond & pectin methylesterase	0.02	Orthogroups_2024-Update
Brara.I03256.1	No alias	EC_3.1 hydrolase acting on ester bond & pectin methylesterase	0.03	Orthogroups_2024-Update
GRMZM2G321870	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.02	Orthogroups_2024-Update
Glyma.02G008400	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Orthogroups_2024-Update
Glyma.09G077100	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Orthogroups_2024-Update
LOC_Os02g54190	No alias	pectinesterase, putative, expressed	0.03	Orthogroups_2024-Update
PSME_00043969-RA	No alias	(at1g53830 : 497.0) encodes a pectin methylesterase;...	0.05	Orthogroups_2024-Update
PSME_00048380-RA	No alias	(at4g02330 : 476.0) ATPMEPCRB; FUNCTIONS IN:...	0.06	Orthogroups_2024-Update
Potri.015G013700	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Orthogroups_2024-Update
Potri.T148200	No alias	pectin methylesterase 3	0.04	Orthogroups_2024-Update
Pp1s151_23V6	No alias	pectin methylesterase-like protein	0.03	Orthogroups_2024-Update
Solyc02g080200	No alias	Pectinesterase (AHRD V3.3 *** K4B9P2_SOLLC)	0.03	Orthogroups_2024-Update
Solyc06g009190	No alias	Pectinesterase (AHRD V3.3 *** K4C3U9_SOLLC)	0.03	Orthogroups_2024-Update
Solyc07g064170	No alias	pectin esterase	0.02	Orthogroups_2024-Update
Sopen01g036780	No alias	Pectinesterase	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004857	enzyme inhibitor activity	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	InterProScan predictions
BP	GO:0042545	cell wall modification	IEA	InterProScan predictions
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0098772	molecular function regulator	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005506	iron ion binding	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Predicted GO
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Predicted GO
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Predicted GO
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Predicted GO
MF	GO:0020037	heme binding	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0046906	tetrapyrrole binding	IEP	Predicted GO
MF	GO:0046914	transition metal ion binding	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
BP	GO:0055114	oxidation-reduction process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	331	628
IPR006501	Pectinesterase_inhib_dom	87	244

External Links

No external refs found!

PSME_00038239-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation