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Description : (at1g11290 : 570.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 118.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1140.0) & (original description: no original description)
Gene families : OG_42_0012016 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012016_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00039121-RA | |
| Cluster | HCCA clusters: Cluster_42 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| MA_56660g0010 | No alias | (at2g13600 : 517.0) Pentatricopeptide repeat (PPR)... | 0.06 | Orthogroups_2024-Update | |
| PSME_00013854-RA | No alias | (at2g13600 : 421.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 567 | 614 |
| IPR002885 | Pentatricopeptide_repeat | 162 | 210 |
| IPR002885 | Pentatricopeptide_repeat | 264 | 310 |
| IPR002885 | Pentatricopeptide_repeat | 466 | 512 |
| IPR002885 | Pentatricopeptide_repeat | 365 | 412 |
| IPR002885 | Pentatricopeptide_repeat | 532 | 564 |
| IPR002885 | Pentatricopeptide_repeat | 641 | 665 |
| IPR002885 | Pentatricopeptide_repeat | 238 | 263 |
| IPR002885 | Pentatricopeptide_repeat | 440 | 465 |
| IPR002885 | Pentatricopeptide_repeat | 71 | 94 |
| No external refs found! |