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  5. PSME_00039725-RA

PSME_00039725-RA


Description : (at5g66460 : 444.0) Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT3G10890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 888.0) & (original description: no original description)


Gene families : OG_42_0000309 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000309_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00039725-RA
Cluster HCCA clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
A4A49_01123 No alias mannan endo-1,4-beta-mannosidase 1 0.03 Orthogroups_2024-Update
At1g02310 No alias Glycosyl hydrolase superfamily protein... 0.02 Orthogroups_2024-Update
Brara.G01259.1 No alias endo-beta-1,4-mannanase 0.03 Orthogroups_2024-Update
Glyma.19G226300 No alias Glycosyl hydrolase superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os03g61270 No alias OsMan04 - Endo-Beta-Mannanase, expressed 0.02 Orthogroups_2024-Update
PSME_00025494-RA No alias (at5g66460 : 437.0) Glycosyl hydrolase superfamily... 0.03 Orthogroups_2024-Update
Potri.016G014801 No alias Glycosyl hydrolase superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001547 Glyco_hydro_5 464 759
IPR001547 Glyco_hydro_5 59 349
No external refs found!