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  5. PSME_00040036-RA

PSME_00040036-RA


Description : (at5g55020 : 216.0) Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB120).; myb domain protein 120 (MYB120); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 97 (TAIR:AT4G26930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p93417|gam1_orysa : 207.0) Transcription factor GAMYB (OsGAMyb) - Oryza sativa (Rice) & (reliability: 432.0) & (original description: no original description)


Gene families : OG_42_0000002 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00040036-RA
Cluster HCCA clusters: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
39516 No alias myb domain protein 3 0.04 Orthogroups_2024-Update
84195 No alias myb domain protein 61 0.04 Orthogroups_2024-Update
A4A49_11142 No alias transcription factor myb30 0.03 Orthogroups_2024-Update
A4A49_12677 No alias myb-related protein pp2 0.03 Orthogroups_2024-Update
A4A49_28222 No alias transcription factor rax3 0.03 Orthogroups_2024-Update
At1g16490 No alias Transcription factor MYB58... 0.03 Orthogroups_2024-Update
Bradi2g11676 No alias myb domain protein 12 0.02 Orthogroups_2024-Update
Bradi3g48886 No alias myb domain protein 79 0.02 Orthogroups_2024-Update
Brara.B00599.1 No alias MYB class-R2R3 subgroup-8 transcription factor 0.02 Orthogroups_2024-Update
Brara.C03242.1 No alias MYB class-R2R3 transcription factor 0.02 Orthogroups_2024-Update
Brara.E02832.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.03 Orthogroups_2024-Update
Brara.I00832.1 No alias MYB class-R2R3 subgroup-14 transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G000818 No alias myb domain protein 4 0.02 Orthogroups_2024-Update
GRMZM2G017268 No alias myb domain protein 93 0.03 Orthogroups_2024-Update
GRMZM2G047600 No alias myb domain protein 112 0.04 Orthogroups_2024-Update
GRMZM2G088189 No alias myb domain protein 86 0.03 Orthogroups_2024-Update
GRMZM2G126566 No alias myb domain protein 20 0.03 Orthogroups_2024-Update
GRMZM2G160838 No alias myb domain protein 4 0.02 Orthogroups_2024-Update
GRMZM2G171781 No alias myb domain protein 61 0.02 Orthogroups_2024-Update
GRMZM2G325907 No alias myb domain protein 103 0.03 Orthogroups_2024-Update
Glyma.04G125700 No alias myb domain protein 33 0.03 Orthogroups_2024-Update
Glyma.08G191500 No alias myb domain protein 26 0.04 Orthogroups_2024-Update
Glyma.11G194100 No alias myb domain protein 36 0.02 Orthogroups_2024-Update
Glyma.13G061900 No alias myb domain protein 16 0.06 Orthogroups_2024-Update
Glyma.19G038100 No alias myb domain protein 83 0.03 Orthogroups_2024-Update
Glyma.19G224600 No alias myb domain protein 61 0.03 Orthogroups_2024-Update
Glyma.20G047600 No alias myb domain protein 33 0.04 Orthogroups_2024-Update
HORVU2Hr1G041300.2 No alias MYB class-R2R3 subgroup-11 transcription factor 0.03 Orthogroups_2024-Update
HORVU2Hr1G120340.2 No alias MYB class-R2R3 subgroup-8 transcription factor 0.03 Orthogroups_2024-Update
HORVU3Hr1G056980.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G103970.5 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU6Hr1G060650.6 No alias accessory protein (LMI2) of floral meristem identity control 0.02 Orthogroups_2024-Update
LOC_Os02g02370 No alias myb-like DNA-binding domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os02g41510 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g42870 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g04820 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g31470 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g33070 No alias myb-like DNA-binding domain containing protein,... 0.02 Orthogroups_2024-Update
MA_124887g0010 No alias (at4g38620 : 244.0) Encodes a R2R3 MYB protein which is... 0.03 Orthogroups_2024-Update
MA_246142g0010 No alias (at4g38620 : 256.0) Encodes a R2R3 MYB protein which is... 0.03 Orthogroups_2024-Update
MA_80033g0010 No alias (at5g65790 : 232.0) Encodes a putative MYB transcription... 0.03 Orthogroups_2024-Update
PSME_00022392-RA No alias (at3g13540 : 238.0) Encodes a member of the MYB family... 0.05 Orthogroups_2024-Update
PSME_00023605-RA No alias (p20026|myb1_horvu : 272.0) Myb-related protein Hv1 -... 0.06 Orthogroups_2024-Update
PSME_00037152-RA No alias (at3g13540 : 192.0) Encodes a member of the MYB family... 0.05 Orthogroups_2024-Update
PSME_00051244-RA No alias (at1g22640 : 178.0) MYB-type transcription factor (MYB3)... 0.02 Orthogroups_2024-Update
Potri.004G126700 No alias myb domain protein 96 0.02 Orthogroups_2024-Update
Potri.005G074500 No alias myb domain protein 93 0.02 Orthogroups_2024-Update
Potri.009G018700 No alias myb domain protein 33 0.02 Orthogroups_2024-Update
Potri.013G056400 No alias myb domain protein 5 0.02 Orthogroups_2024-Update
Potri.017G075000 No alias Duplicated homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G250600.1 No alias regulatory protein *(LAF1) of phytochrome signalling... 0.04 Orthogroups_2024-Update
Seita.3G161500.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.04 Orthogroups_2024-Update
Seita.3G232500.1 No alias MYB class-R2R3 subgroup-4 transcription factor 0.04 Orthogroups_2024-Update
Seita.8G153200.1 No alias MYB class-R2R3 subgroup-1 transcription factor 0.04 Orthogroups_2024-Update
Solyc08g065910 No alias blind-like5 0.03 Orthogroups_2024-Update
Solyc11g072060 No alias MYB-related transcription factor (AHRD V3.3 *** A0A059PSR6_SALMI) 0.03 Orthogroups_2024-Update
Sopen01g023280 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update
Sopen01g053540 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen06g023610 No alias Myb-like DNA-binding domain 0.05 Orthogroups_2024-Update
Sopen08g019610 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!