PSME_00041159-RA

Description : (at2g13600 : 713.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 135.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1426.0) & (original description: no original description)

Gene families : OG_42_0009146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009146_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00041159-RA
Cluster	HCCA clusters: Cluster_42

Target	Alias	Description	ECC score	Gene Family Method	Actions
MA_35442g0010	No alias	(at2g13600 : 723.0) Pentatricopeptide repeat (PPR)...	0.09	Orthogroups_2024-Update
Potri.007G104700	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004435	phosphatidylinositol phospholipase C activity	IEP	Predicted GO
MF	GO:0004620	phospholipase activity	IEP	Predicted GO
MF	GO:0004629	phospholipase C activity	IEP	Predicted GO
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Predicted GO
MF	GO:0016298	lipase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	662	786
IPR002885	Pentatricopeptide_repeat	118	146
IPR002885	Pentatricopeptide_repeat	463	486
IPR002885	Pentatricopeptide_repeat	564	587
IPR002885	Pentatricopeptide_repeat	325	351
IPR002885	Pentatricopeptide_repeat	247	297
IPR002885	Pentatricopeptide_repeat	381	429
IPR002885	Pentatricopeptide_repeat	147	194
IPR002885	Pentatricopeptide_repeat	488	536

External Links

No external refs found!

PSME_00041159-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation