PSME_00041383-RA

Description : (at1g35460 : 145.0) basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G09180.1); Has 1965 Blast hits to 1959 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 1958; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 290.0) & (original description: no original description)

Gene families : OG_42_0000702 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000702_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00041383-RA
Cluster	HCCA clusters: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
A4A49_28561	No alias	transcription factor bhlh130	0.03	Orthogroups_2024-Update
A4A49_35650	No alias	transcription factor bhlh128	0.03	Orthogroups_2024-Update
Bradi3g39927	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Brara.D02568.1	No alias	transcriptional co-activator *(FBH) & bHLH-type...	0.03	Orthogroups_2024-Update
Brara.J00400.1	No alias	bHLH-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM5G879527	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
Glyma.08G152500	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.12G238700	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Glyma.15G032700	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Glyma.20G248100	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
HORVU3Hr1G089090.2	No alias	bHLH-type transcription factor	0.03	Orthogroups_2024-Update
HORVU7Hr1G050530.1	No alias	transcriptional co-activator *(FBH) & bHLH-type...	0.02	Orthogroups_2024-Update
LOC_Os01g67480	No alias	helix-loop-helix DNA-binding domain containing protein, expressed	0.03	Orthogroups_2024-Update
LOC_Os09g31300	No alias	helix-loop-helix DNA-binding domain containing protein, expressed	0.04	Orthogroups_2024-Update
Pp1s272_10V6	No alias	dna binding	0.02	Orthogroups_2024-Update
Pp1s34_227V6	No alias	F12A4.2; basic helix-loop-helix (bHLH) family protein...	0.02	Orthogroups_2024-Update
Pp1s83_128V6	No alias	dna binding	0.02	Orthogroups_2024-Update
Sopen01g033890	No alias	Helix-loop-helix DNA-binding domain	0.04	Orthogroups_2024-Update
Sopen09g036050	No alias	Helix-loop-helix DNA-binding domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions

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Type	GO Term	Name	Evidence	Source
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	Predicted GO
BP	GO:0009889	regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0010468	regulation of gene expression	IEP	Predicted GO
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
BP	GO:0016458	gene silencing	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Predicted GO
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predicted GO
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0019222	regulation of metabolic process	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
BP	GO:0031047	gene silencing by RNA	IEP	Predicted GO
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
BP	GO:0042221	response to chemical	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	Predicted GO
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
BP	GO:0050789	regulation of biological process	IEP	Predicted GO
BP	GO:0050794	regulation of cellular process	IEP	Predicted GO
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predicted GO
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predicted GO
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Predicted GO
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Predicted GO
BP	GO:0065007	biological regulation	IEP	Predicted GO
BP	GO:0080090	regulation of primary metabolic process	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Predicted GO
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	519	558

External Links

No external refs found!

PSME_00041383-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation