1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00041671-RA

PSME_00041671-RA


Description : (at2g26560 : 227.0) Encodes a lipid acyl hydrolase with wide substrate specificity that accumulates upon infection by fungal and bacterial pathogens. Protein is localized in the cytoplasm in healthy leaves, and in membranes in infected cells. Plays a role in cell death and differentially affects the accumulation of oxylipins. Contributes to resistance to virus.; phospholipase A 2A (PLA2A); FUNCTIONS IN: lipase activity, nutrient reservoir activity; INVOLVED IN: in 6 processes; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (TAIR:AT4G37070.2); Has 2114 Blast hits to 2104 proteins in 375 species: Archae - 0; Bacteria - 479; Metazoa - 231; Fungi - 198; Plants - 897; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink). & (p15478|pat5_soltu : 177.0) Patatin T5 precursor (Potato tuber protein) - Solanum tuberosum (Potato) & (reliability: 454.0) & (original description: no original description)


Gene families : OG_42_0000167 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000167_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00041671-RA
Cluster HCCA clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
231548 No alias phospholipase A 2A 0.02 Orthogroups_2024-Update
A4A49_03126 No alias patatin-like protein 3 0.03 Orthogroups_2024-Update
A4A49_11197 No alias patatin-like protein 2 0.03 Orthogroups_2024-Update
At2g26560 No alias Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723] 0.03 Orthogroups_2024-Update
Bradi3g37980 No alias phospholipase A 2A 0.05 Orthogroups_2024-Update
Bradi3g38290 No alias phospholipase A 2A 0.03 Orthogroups_2024-Update
Bradi3g38310 No alias phospholipase A 2A 0.02 Orthogroups_2024-Update
GRMZM2G034271 No alias phospholipase A 2A 0.04 Orthogroups_2024-Update
Glyma.06G037900 No alias phospholipase A 2A 0.02 Orthogroups_2024-Update
Glyma.11G056900 No alias Acyl transferase/acyl hydrolase/lysophospholipase... 0.03 Orthogroups_2024-Update
Glyma.14G081200 No alias phospholipase A 2A 0.02 Orthogroups_2024-Update
HORVU4Hr1G074970.4 No alias phospholipase-A2 *(pPLA2-II)) 0.04 Orthogroups_2024-Update
MA_10436005g0010 No alias (at2g26560 : 305.0) Encodes a lipid acyl hydrolase with... 0.04 Orthogroups_2024-Update
MA_10437194g0020 No alias (at4g37060 : 347.0) Patatin-related phospholipase A.... 0.04 Orthogroups_2024-Update
MA_125844g0010 No alias (at4g37060 : 246.0) Patatin-related phospholipase A.... 0.03 Orthogroups_2024-Update
PSME_00019322-RA No alias (at4g37050 : 322.0) Patatin-related phospholipase A.... 0.04 Orthogroups_2024-Update
Potri.002G128000 No alias phospholipase A 2A 0.05 Orthogroups_2024-Update
Potri.017G133800 No alias phospholipase A 2A 0.03 Orthogroups_2024-Update
Potri.T096000 No alias phospholipase A 2A 0.04 Orthogroups_2024-Update
Pp1s134_27V6 No alias patatin-like protein 0.02 Orthogroups_2024-Update
Pp1s141_142V6 No alias patatin t5 0.02 Orthogroups_2024-Update
Seita.6G183800.1 No alias phospholipase-A2 *(pPLA2-II)) 0.05 Orthogroups_2024-Update
Seita.6G183900.1 No alias phospholipase-A2 *(pPLA2-II)) 0.03 Orthogroups_2024-Update
Sobic.003G389400.1 No alias phospholipase-A2 *(pPLA2-II)) 0.02 Orthogroups_2024-Update
Sobic.005G186400.1 No alias phospholipase-A2 *(pPLA2-II)) 0.02 Orthogroups_2024-Update
Sobic.007G158500.1 No alias phospholipase-A2 *(pPLA2-II)) 0.05 Orthogroups_2024-Update
Sobic.007G158600.1 No alias phospholipase-A2 *(pPLA2-II)) 0.03 Orthogroups_2024-Update
Solyc02g065090 No alias Patatin (AHRD V3.3 *** K4B6U4_SOLLC) 0.03 Orthogroups_2024-Update
Solyc03g044710 No alias Patatin (AHRD V3.3 *** K4BG88_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0003352 regulation of cilium movement IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004474 malate synthase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006097 glyoxylate cycle IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009617 response to bacterium IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
BP GO:0032879 regulation of localization IEP Predicted GO
BP GO:0032886 regulation of microtubule-based process IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
BP GO:0042742 defense response to bacterium IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0046487 glyoxylate metabolic process IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051270 regulation of cellular component movement IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
BP GO:0060632 regulation of microtubule-based movement IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002641 PNPLA_dom 12 219
No external refs found!