PSME_00041797-RA

Description : (at1g12280 : 246.0) LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 17827 Blast hits to 16139 proteins in 646 species: Archae - 26; Bacteria - 895; Metazoa - 2143; Fungi - 215; Plants - 14237; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink). & (reliability: 444.0) & (original description: no original description)

Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00041797-RA
Cluster	HCCA clusters: Cluster_156

Target	Alias	Description	ECC score	Gene Family Method
At5g47250	No alias	Probable disease resistance protein At5g47250...	0.02	Orthogroups_2024-Update
Bradi5g15560	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Brara.H02821.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
MA_549555g0010	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
MA_9432601g0010	No alias	(at5g63020 : 105.0) Disease resistance protein...	0.02	Orthogroups_2024-Update
PSME_00004450-RA	No alias	(at4g10780 : 156.0) LRR and NB-ARC domains-containing...	0.04	Orthogroups_2024-Update
PSME_00011882-RA	No alias	(at1g12220 : 145.0) Resistance gene, mediates resistance...	0.01	Orthogroups_2024-Update
PSME_00011883-RA	No alias	(at4g27220 : 218.0) NB-ARC domain-containing disease...	0.04	Orthogroups_2024-Update
PSME_00040363-RA	No alias	(at5g63020 : 222.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
Potri.001G313301	No alias	Disease resistance protein (CC-NBS-LRR class) family	0.03	Orthogroups_2024-Update
Potri.T028700	No alias	NB-ARC domain-containing disease resistance protein	0.02	Orthogroups_2024-Update
Seita.7G165200.1	No alias	Unknown function	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003997	acyl-CoA oxidase activity	IEP	Predicted GO
MF	GO:0004555	alpha,alpha-trehalase activity	IEP	Predicted GO
MF	GO:0004559	alpha-mannosidase activity	IEP	Predicted GO
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Predicted GO
CC	GO:0005777	peroxisome	IEP	Predicted GO
BP	GO:0005996	monosaccharide metabolic process	IEP	Predicted GO
BP	GO:0006013	mannose metabolic process	IEP	Predicted GO
BP	GO:0006635	fatty acid beta-oxidation	IEP	Predicted GO
BP	GO:0008037	cell recognition	IEP	Predicted GO
MF	GO:0008483	transaminase activity	IEP	Predicted GO
BP	GO:0009062	fatty acid catabolic process	IEP	Predicted GO
MF	GO:0015923	mannosidase activity	IEP	Predicted GO
MF	GO:0015927	trehalase activity	IEP	Predicted GO
BP	GO:0016042	lipid catabolic process	IEP	Predicted GO
BP	GO:0016054	organic acid catabolic process	IEP	Predicted GO
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Predicted GO
BP	GO:0019318	hexose metabolic process	IEP	Predicted GO
BP	GO:0019395	fatty acid oxidation	IEP	Predicted GO
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Predicted GO
BP	GO:0022414	reproductive process	IEP	Predicted GO
BP	GO:0030258	lipid modification	IEP	Predicted GO
MF	GO:0033743	peptide-methionine (R)-S-oxide reductase activity	IEP	Predicted GO
BP	GO:0034440	lipid oxidation	IEP	Predicted GO
CC	GO:0042579	microbody	IEP	Predicted GO
BP	GO:0044242	cellular lipid catabolic process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0046395	carboxylic acid catabolic process	IEP	Predicted GO
BP	GO:0048544	recognition of pollen	IEP	Predicted GO
MF	GO:0050662	coenzyme binding	IEP	Predicted GO
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Predicted GO
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Predicted GO
MF	GO:0071949	FAD binding	IEP	Predicted GO
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR025875	Leu-rich_rpt_4	581	617
IPR002182	NB-ARC	180	404

External Links

No external refs found!

PSME_00041797-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation