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  5. PSME_00042559-RA

PSME_00042559-RA


Description : (at1g07590 : 491.0) Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PENTATRICOPEPTIDE REPEAT 596 (TAIR:AT1G80270.3); Has 14416 Blast hits to 6927 proteins in 166 species: Archae - 0; Bacteria - 10; Metazoa - 31; Fungi - 36; Plants - 14001; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink). & (reliability: 982.0) & (original description: no original description)


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00042559-RA
Cluster HCCA clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Bradi3g54100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G361615 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
Sobic.010G252100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen01g032900 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 356 382
IPR002885 Pentatricopeptide_repeat 247 294
IPR002885 Pentatricopeptide_repeat 391 434
No external refs found!