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  5. PSME_00042901-RA

PSME_00042901-RA


Description : (at4g33170 : 526.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G09950.1); Has 55398 Blast hits to 13784 proteins in 253 species: Archae - 0; Bacteria - 15; Metazoa - 97; Fungi - 52; Plants - 54672; Viruses - 0; Other Eukaryotes - 562 (source: NCBI BLink). & (q76c99|rf1_orysa : 138.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1052.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00042901-RA
Cluster HCCA clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
115259 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
82255 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
A4A49_18851 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
At4g21300 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Orthogroups_2024-Update
Bradi1g12697 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g68478 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.B00951.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.02G174500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.19G090900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU5Hr1G113840.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G030840.1 No alias RNA editing factor *(MEF29) 0.03 Orthogroups_2024-Update
LOC_Os01g60250 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_525914g0010 No alias (at1g11290 : 644.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_771696g0010 No alias (at1g20230 : 490.0) Pentatricopeptide repeat (PPR)... 0.07 Orthogroups_2024-Update
MA_921g0010 No alias (at3g12770 : 484.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00014882-RA No alias (at4g13650 : 307.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00026226-RA No alias (at3g46790 : 588.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00046347-RA No alias (at2g13600 : 438.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
Pp1s446_7V6 No alias F18A5.40; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Seita.5G242100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G016300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g081900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc12g096510 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009086 methionine biosynthetic process IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 247 272
IPR002885 Pentatricopeptide_repeat 79 95
IPR002885 Pentatricopeptide_repeat 349 374
IPR002885 Pentatricopeptide_repeat 546 570
IPR002885 Pentatricopeptide_repeat 611 640
IPR032867 DYW_dom 644 730
IPR002885 Pentatricopeptide_repeat 273 320
IPR002885 Pentatricopeptide_repeat 171 219
IPR002885 Pentatricopeptide_repeat 471 518
IPR002885 Pentatricopeptide_repeat 100 153
No external refs found!