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  5. PSME_00043778-RA

PSME_00043778-RA


Description : (at1g02080 : 118.0) transcription regulators; FUNCTIONS IN: transcription regulator activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCR4-Not complex component, Not1 (InterPro:IPR007196). & (reliability: 236.0) & (original description: no original description)


Gene families : OG_42_0004247 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004247_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00043778-RA
Cluster HCCA clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
PSME_00035494-RA No alias (at1g02080 : 176.0) transcription regulators; FUNCTIONS... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR032194 CNOT1_HEAT 133 195
IPR032193 CNOT1_TTP_bind 226 311
IPR009637 GPR107-like 2 45
No external refs found!