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  5. PSME_00043848-RA

PSME_00043848-RA


Description : (at1g70210 : 237.0) Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination.; CYCLIN D1;1 (CYCD1;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin D2;1 (TAIR:AT2G22490.1); Has 3455 Blast hits to 3453 proteins in 343 species: Archae - 0; Bacteria - 0; Metazoa - 1586; Fungi - 382; Plants - 1073; Viruses - 13; Other Eukaryotes - 401 (source: NCBI BLink). & (reliability: 474.0) & (original description: no original description)


Gene families : OG_42_0000136 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000136_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00043848-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
At4g37630 No alias Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2] 0.03 Orthogroups_2024-Update
At5g67260 No alias CYCLIN D3;2 [Source:TAIR;Acc:AT5G67260] 0.02 Orthogroups_2024-Update
Brara.J02308.1 No alias regulatory protein *(CYCD) of cell cycle 0.03 Orthogroups_2024-Update
Brara.K00959.1 No alias regulatory protein *(CYCD) of cell cycle 0.03 Orthogroups_2024-Update
Glyma.02G030200 No alias CYCLIN D1;1 0.03 Orthogroups_2024-Update
Glyma.05G097300 No alias CYCLIN D3;2 0.03 Orthogroups_2024-Update
MA_10429174g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Potri.004G032100 No alias Cyclin D6;1 0.04 Orthogroups_2024-Update
Potri.007G055300 No alias cyclin d5;1 0.03 Orthogroups_2024-Update
Potri.008G146600 No alias CYCLIN D1;1 0.03 Orthogroups_2024-Update
Solyc03g006670 No alias cyclinD6_2 0.03 Orthogroups_2024-Update
Solyc07g054950 No alias cyclinD6_1 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 190 293
IPR006671 Cyclin_N 58 187
No external refs found!