1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00043920-RA

PSME_00043920-RA


Description : (at1g09155 : 152.0) phloem protein 2-B15 (PP2-B15); FUNCTIONS IN: carbohydrate binding; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: phloem protein 2-B13 (TAIR:AT1G56240.1); Has 535 Blast hits to 526 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 535; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 300.0) & (original description: no original description)


Gene families : OG_42_0000141 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000141_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00043920-RA
Cluster HCCA clusters: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
At1g65390 No alias Protein PHLOEM PROTEIN 2-LIKE A5... 0.03 Orthogroups_2024-Update
At5g24560 No alias phloem protein 2-B12 [Source:TAIR;Acc:AT5G24560] 0.04 Orthogroups_2024-Update
Bradi1g00970 No alias phloem protein 2-B10 0.03 Orthogroups_2024-Update
Bradi3g17208 No alias phloem protein 2-B10 0.05 Orthogroups_2024-Update
Bradi3g54993 No alias phloem protein 2-B2 0.02 Orthogroups_2024-Update
Brara.B03100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.B03101.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F03422.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.F03426.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G099376 No alias F-box family protein 0.03 Orthogroups_2024-Update
Glyma.03G233900 No alias phloem protein 2-B15 0.03 Orthogroups_2024-Update
Glyma.07G222500 No alias phloem protein 2-A1 0.03 Orthogroups_2024-Update
Glyma.10G169300 No alias phloem protein 2-B10 0.03 Orthogroups_2024-Update
Glyma.14G073300 No alias phloem protein 2-B10 0.02 Orthogroups_2024-Update
MA_10434357g0020 No alias (at1g09155 : 177.0) phloem protein 2-B15 (PP2-B15);... 0.03 Orthogroups_2024-Update
MA_179528g0010 No alias (at1g09155 : 169.0) phloem protein 2-B15 (PP2-B15);... 0.04 Orthogroups_2024-Update
MA_203210g0010 No alias (at1g09155 : 147.0) phloem protein 2-B15 (PP2-B15);... 0.04 Orthogroups_2024-Update
MA_956503g0010 No alias (at2g02240 : 167.0) maternal effect embryo arrest 66... 0.03 Orthogroups_2024-Update
PSME_00033255-RA No alias (at2g02240 : 94.7) maternal effect embryo arrest 66... 0.02 Orthogroups_2024-Update
PSME_00045859-RA No alias (at2g02240 : 125.0) maternal effect embryo arrest 66... 0.03 Orthogroups_2024-Update
PSME_00050854-RA No alias (at2g02240 : 154.0) maternal effect embryo arrest 66... 0.04 Orthogroups_2024-Update
PSME_00051208-RA No alias (at2g02250 : 168.0) phloem protein 2-B2 (PP2-B2);... 0.04 Orthogroups_2024-Update
PSME_00052353-RA No alias (at2g02230 : 141.0) phloem protein 2-B1 (PP2-B1);... 0.04 Orthogroups_2024-Update
PSME_00053226-RA No alias (at2g02230 : 145.0) phloem protein 2-B1 (PP2-B1);... 0.04 Orthogroups_2024-Update
Potri.005G022000 No alias phloem protein 2-B15 0.03 Orthogroups_2024-Update
Potri.006G266900 No alias F-box family protein 0.03 Orthogroups_2024-Update
Potri.013G012600 No alias phloem protein 2-B15 0.02 Orthogroups_2024-Update
Pp1s380_18V6 No alias f-box family protein 0.02 Orthogroups_2024-Update
Seita.5G112200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.6G062100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G119100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc12g096890 No alias F-box protein PP2 (AHRD V3.3 *** A0A059PC27_CICAR) 0.02 Orthogroups_2024-Update
Solyc12g098190 No alias F-box family protein (AHRD V3.3 *** AT2G02240.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 27 68
IPR025886 PP2-like 123 311
No external refs found!