PSME_00044681-RA

Description : (at3g16780 : 285.0) Ribosomal protein L19e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19/L19e (InterPro:IPR000196), Ribosomal protein L19/L19e, domain 3 (InterPro:IPR015974), Ribosomal protein L19/L19e, domain 1 (InterPro:IPR015972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L19e family protein (TAIR:AT4G02230.1); Has 1139 Blast hits to 1139 proteins in 410 species: Archae - 291; Bacteria - 0; Metazoa - 317; Fungi - 171; Plants - 158; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink). & (q08066|rl19_maize : 107.0) 60S ribosomal protein L19 (Fragment) - Zea mays (Maize) & (reliability: 570.0) & (original description: no original description)

Gene families : OG_42_0001643 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001643_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00044681-RA
Cluster	HCCA clusters: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
271656	No alias	Ribosomal protein L19e family protein	0.06	Orthogroups_2024-Update
A4A49_58465	No alias	60s ribosomal protein l19-2	0.07	Orthogroups_2024-Update
Bradi1g17920	No alias	Ribosomal protein L19e family protein	0.05	Orthogroups_2024-Update
Bradi1g63010	No alias	Ribosomal protein L19e family protein	0.04	Orthogroups_2024-Update
Brara.I00133.1	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.I05560.1	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Brara.J00128.1	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Cre02.g075700	No alias	Ribosomal protein L19e family protein	0.09	Orthogroups_2024-Update
GRMZM2G116135	No alias	Ribosomal protein L19e family protein	0.02	Orthogroups_2024-Update
Glyma.02G016000	No alias	Ribosomal protein L19e family protein	0.03	Orthogroups_2024-Update
Glyma.19G213200	No alias	Ribosomal protein L19e family protein	0.03	Orthogroups_2024-Update
HORVU2Hr1G018700.1	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
HORVU4Hr1G049670.2	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Kfl00915_0030	kfl00915_0030_v1.1	(at1g02780 : 290.0) embryo defective 2386 (emb2386);...	0.02	Orthogroups_2024-Update
MA_22977g0010	No alias	(at1g02780 : 282.0) embryo defective 2386 (emb2386);...	0.03	Orthogroups_2024-Update
Mp7g09050.1	No alias	component RPL19 of LSU proteome component	0.04	Orthogroups_2024-Update
Pp1s121_144V6	No alias	60s ribosomal protein	0.1	Orthogroups_2024-Update
Pp1s144_37V6	No alias	ribosomal protein l19	0.08	Orthogroups_2024-Update
Pp1s235_118V6	No alias	60s ribosomal protein	0.05	Orthogroups_2024-Update
Pp1s302_25V6	No alias	ribosomal protein l19	0.03	Orthogroups_2024-Update
Pp1s3_375V6	No alias	60s ribosomal protein l19-3	0.05	Orthogroups_2024-Update
Pp1s50_102V6	No alias	60s ribosomal protein l19-3	0.07	Orthogroups_2024-Update
Seita.4G043900.1	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Sobic.004G045300.1	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Sobic.010G069400.1	No alias	component *(eL19) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Solyc09g075430	No alias	Ribosomal protein L19 (AHRD V3.3 *** K4CVC0_SOLLC)	0.04	Orthogroups_2024-Update
Sopen09g030210	No alias	Ribosomal protein L19e	0.05	Orthogroups_2024-Update
evm.model.contig_735.3	No alias	(at3g16780 : 205.0) Ribosomal protein L19e family...	0.04	Orthogroups_2024-Update
evm.model.tig00021181.1	No alias	(at1g02780 : 206.0) embryo defective 2386 (emb2386);...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Predicted GO
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Predicted GO
MF	GO:0004222	metalloendopeptidase activity	IEP	Predicted GO
MF	GO:0004427	inorganic diphosphatase activity	IEP	Predicted GO
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Predicted GO
MF	GO:0004579	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	IEP	Predicted GO
CC	GO:0005743	mitochondrial inner membrane	IEP	Predicted GO
CC	GO:0005783	endoplasmic reticulum	IEP	Predicted GO
BP	GO:0006801	superoxide metabolic process	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
CC	GO:0016272	prefoldin complex	IEP	Predicted GO
MF	GO:0016859	cis-trans isomerase activity	IEP	Predicted GO
BP	GO:0018208	peptidyl-proline modification	IEP	Predicted GO
CC	GO:0019866	organelle inner membrane	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
CC	GO:0031090	organelle membrane	IEP	Predicted GO
CC	GO:0031966	mitochondrial membrane	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044455	mitochondrial membrane part	IEP	Predicted GO
MF	GO:0051082	unfolded protein binding	IEP	Predicted GO
CC	GO:0061617	MICOS complex	IEP	Predicted GO
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000196	Ribosomal_L19/L19e	17	159

External Links

No external refs found!

PSME_00044681-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation