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Description : (at4g19890 : 526.0) Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1). & (q76c99|rf1_orysa : 291.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1052.0) & (original description: no original description)
Gene families : OG_42_0010070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010070_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00046133-RA | |
| Cluster | HCCA clusters: Cluster_42 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AC218998.2_FG003 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi4g14010 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Sobic.005G182300.2 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Solyc02g068890 | No alias | Pentatricopeptide repeat superfamily protein (AHRD V3.3... | 0.05 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 207 | 256 |
| IPR002885 | Pentatricopeptide_repeat | 277 | 326 |
| IPR002885 | Pentatricopeptide_repeat | 523 | 572 |
| IPR002885 | Pentatricopeptide_repeat | 348 | 397 |
| IPR002885 | Pentatricopeptide_repeat | 453 | 502 |
| IPR002885 | Pentatricopeptide_repeat | 415 | 445 |
| IPR002885 | Pentatricopeptide_repeat | 145 | 169 |
| IPR033443 | PPR_long | 574 | 691 |
| No external refs found! |