Description : (at1g11290 : 679.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 128.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1358.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00046266-RA | |
Cluster | HCCA clusters: Cluster_10 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
133644 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
78092 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
At1g56570 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | Orthogroups_2024-Update | |
At3g14330 | No alias | Pentatricopeptide repeat-containing protein At3g14330... | 0.03 | Orthogroups_2024-Update | |
Bradi4g22520 | No alias | mitochondrial editing factor 22 | 0.02 | Orthogroups_2024-Update | |
Glyma.10G190600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.13G357000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G063300.4 | No alias | RNA editing factor *(ELI1) | 0.02 | Orthogroups_2024-Update | |
MA_183278g0010 | No alias | (at3g12770 : 619.0) Encodes a pentatricopeptide repeat... | 0.04 | Orthogroups_2024-Update | |
PSME_00003038-RA | No alias | (at1g11290 : 364.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
Sobic.001G009400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Solyc03g096610 | No alias | Pentatricopeptide repeat (PPR) superfamily protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
Sopen12g002530 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
BP | GO:0008037 | cell recognition | IEP | Predicted GO |
MF | GO:0008536 | Ran GTPase binding | IEP | Predicted GO |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Predicted GO |
MF | GO:0008883 | glutamyl-tRNA reductase activity | IEP | Predicted GO |
MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Predicted GO |
MF | GO:0019899 | enzyme binding | IEP | Predicted GO |
BP | GO:0022414 | reproductive process | IEP | Predicted GO |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Predicted GO |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Predicted GO |
MF | GO:0035091 | phosphatidylinositol binding | IEP | Predicted GO |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Predicted GO |
BP | GO:0048193 | Golgi vesicle transport | IEP | Predicted GO |
BP | GO:0048544 | recognition of pollen | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 175 | 200 |
IPR002885 | Pentatricopeptide_repeat | 579 | 603 |
IPR002885 | Pentatricopeptide_repeat | 201 | 248 |
IPR002885 | Pentatricopeptide_repeat | 302 | 348 |
IPR002885 | Pentatricopeptide_repeat | 504 | 550 |
IPR002885 | Pentatricopeptide_repeat | 103 | 147 |
IPR002885 | Pentatricopeptide_repeat | 402 | 450 |
IPR032867 | DYW_dom | 677 | 800 |
No external refs found! |