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  5. PSME_00046544-RA

PSME_00046544-RA


Description : (at1g11920 : 429.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: root hair specific 14 (TAIR:AT4G22080.1); Has 1675 Blast hits to 1668 proteins in 273 species: Archae - 0; Bacteria - 759; Metazoa - 0; Fungi - 209; Plants - 697; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). & (p40973|pel_lillo : 370.0) Pectate lyase precursor (EC 4.2.2.2) - Lilium longiflorum (Trumpet lily) & (reliability: 858.0) & (original description: no original description)


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00046544-RA
Cluster HCCA clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Brara.B00588.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
MA_101171g0010 No alias (at1g67750 : 487.0) Pectate lyase family protein;... 0.05 Orthogroups_2024-Update
MA_10426822g0020 No alias (at1g67750 : 481.0) Pectate lyase family protein;... 0.04 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
MA_91467g0020 No alias (at4g24780 : 289.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_97947g0010 No alias (at1g67750 : 510.0) Pectate lyase family protein;... 0.04 Orthogroups_2024-Update
PSME_00014422-RA No alias (at4g24780 : 543.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00020784-RA No alias (at4g24780 : 550.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0009916 alternative oxidase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 147 332
No external refs found!