1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00047125-RA

PSME_00047125-RA


Description : (at5g20640 : 127.0) Protein of unknown function (DUF567); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: leaf whorl, hypocotyl, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT2G05910.1); Has 293 Blast hits to 292 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 293; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (gnl|cdd|38754 : 85.2) no description available & (reliability: 254.0) & (original description: no original description)


Gene families : OG_42_0003933 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003933_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047125-RA
Cluster HCCA clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
MA_21906g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_571782g0010 No alias (at2g05910 : 119.0) Protein of unknown function... 0.02 Orthogroups_2024-Update
Seita.7G112900.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
InterPro domains Description Start Stop
IPR007612 LOR 188 373
No external refs found!