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  5. PSME_00047223-RA

PSME_00047223-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047223-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
A4A49_27951 No alias squamosa promoter-binding-like protein 8 0.02 Orthogroups_2024-Update
At1g69170 No alias Squamosa promoter-binding-like protein 6... 0.04 Orthogroups_2024-Update
Bradi1g26720 No alias squamosa promoter binding protein-like 4 0.04 Orthogroups_2024-Update
Bradi4g34667 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 Orthogroups_2024-Update
Brara.C01519.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G01764.1 No alias SBP-type transcription factor 0.04 Orthogroups_2024-Update
Brara.I01777.1 No alias SBP-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I03020.1 No alias SBP-type transcription factor 0.02 Orthogroups_2024-Update
Cre01.g012200 No alias squamosa promoter-binding protein-like 12 0.01 Orthogroups_2024-Update
Cre07.g335150 No alias squamosa promoter binding protein-like 4 0.01 Orthogroups_2024-Update
GRMZM2G148467 No alias squamosa promoter binding protein-like 10 0.02 Orthogroups_2024-Update
GRMZM5G878561 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.01G063700 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.01G075900 No alias squamosa promoter binding protein-like 8 0.03 Orthogroups_2024-Update
Glyma.05G019000 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.06G168600 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.12G162999 No alias squamosa promoter-binding protein-like 12 0.06 Orthogroups_2024-Update
Glyma.17G080700 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.04 Orthogroups_2024-Update
Glyma.18G005600 No alias squamosa promoter binding protein-like 2 0.02 Orthogroups_2024-Update
PSME_00036287-RA No alias (at1g02065 : 120.0) Encodes an SBP-box gene, a member of... 0.03 Orthogroups_2024-Update
PSME_00053503-RA No alias (at1g02065 : 156.0) Encodes an SBP-box gene, a member of... 0.05 Orthogroups_2024-Update
Potri.003G169400 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Potri.007G138800 No alias squamosa promoter binding protein-like 4 0.04 Orthogroups_2024-Update
Potri.014G057800 No alias squamosa promoter binding protein-like 10 0.03 Orthogroups_2024-Update
Potri.015G060400 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Potri.018G149900 No alias squamosa promoter binding protein-like 2 0.04 Orthogroups_2024-Update
Potri.019G073600 No alias squamosa promoter binding protein-like 15 0.03 Orthogroups_2024-Update
Seita.1G069300.1 No alias SBP-type transcription factor 0.06 Orthogroups_2024-Update
Seita.5G432500.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.010G254200.2 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Solyc02g077920 No alias Colorless non-ripening 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 57 99
No external refs found!