Description : (at3g47370 : 204.0) Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: Ribosomal protein S10p/S20e family protein (TAIR:AT5G62300.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p35686|rs20_orysa : 192.0) 40S ribosomal protein S20 - Oryza sativa (Rice) & (reliability: 408.0) & (original description: no original description)
Gene families : OG_42_0001666 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001666_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00047252-RA | |
Cluster | HCCA clusters: Cluster_117 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
115495 | No alias | Ribosomal protein S10p/S20e family protein | 0.07 | Orthogroups_2024-Update | |
A4A49_09412 | No alias | 40s ribosomal protein s20-2 | 0.05 | Orthogroups_2024-Update | |
Bradi1g51650 | No alias | Ribosomal protein S10p/S20e family protein | 0.07 | Orthogroups_2024-Update | |
Brara.B01551.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.03 | Orthogroups_2024-Update | |
Brara.C01470.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.12 | Orthogroups_2024-Update | |
Brara.I00689.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
Brara.J00726.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.11 | Orthogroups_2024-Update | |
Cre16.g660150 | No alias | Ribosomal protein S10p/S20e family protein | 0.1 | Orthogroups_2024-Update | |
Glyma.03G142200 | No alias | Ribosomal protein S10p/S20e family protein | 0.04 | Orthogroups_2024-Update | |
Glyma.03G142300 | No alias | Ribosomal protein S10p/S20e family protein | 0.09 | Orthogroups_2024-Update | |
Glyma.11G002400 | No alias | Ribosomal protein S10p/S20e family protein | 0.05 | Orthogroups_2024-Update | |
Glyma.19G145000 | No alias | Ribosomal protein S10p/S20e family protein | 0.02 | Orthogroups_2024-Update | |
Glyma.19G145100 | No alias | Ribosomal protein S10p/S20e family protein | 0.04 | Orthogroups_2024-Update | |
HORVU7Hr1G028050.5 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.03 | Orthogroups_2024-Update | |
MA_10429759g0010 | No alias | (at5g62300 : 200.0) Ribosomal protein S10p/S20e family... | 0.04 | Orthogroups_2024-Update | |
Mp2g09440.1 | No alias | component RPS20 of SSU proteome | 0.05 | Orthogroups_2024-Update | |
Potri.012G128300 | No alias | Ribosomal protein S10p/S20e family protein | 0.06 | Orthogroups_2024-Update | |
Pp1s257_105V6 | No alias | 40s ribosomal protein | 0.11 | Orthogroups_2024-Update | |
Pp1s271_9V6 | No alias | 40s ribosomal protein | 0.06 | Orthogroups_2024-Update | |
Seita.4G023300.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.03 | Orthogroups_2024-Update | |
Seita.9G468800.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.05 | Orthogroups_2024-Update | |
Sobic.001G436200.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.09 | Orthogroups_2024-Update | |
Sobic.010G023900.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.07 | Orthogroups_2024-Update | |
Solyc01g096590 | No alias | ribosomal protein S10p/S20e family protein | 0.04 | Orthogroups_2024-Update | |
Sopen00g005660 | No alias | Ribosomal protein S10p/S20e | 0.07 | Orthogroups_2024-Update | |
Sopen01g040320 | No alias | Ribosomal protein S10p/S20e | 0.11 | Orthogroups_2024-Update | |
evm.model.contig_560.7 | No alias | (at3g47370 : 151.0) Ribosomal protein S10p/S20e family... | 0.1 | Orthogroups_2024-Update | |
evm.model.tig00000842.28 | No alias | (p35686|rs20_orysa : 147.0) 40S ribosomal protein S20 -... | 0.1 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
MF | GO:0004129 | cytochrome-c oxidase activity | IEP | Predicted GO |
MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
CC | GO:0005575 | cellular_component | IEP | Predicted GO |
CC | GO:0005622 | intracellular | IEP | Predicted GO |
CC | GO:0005740 | mitochondrial envelope | IEP | Predicted GO |
CC | GO:0005741 | mitochondrial outer membrane | IEP | Predicted GO |
CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Predicted GO |
CC | GO:0005840 | ribosome | IEP | Predicted GO |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Predicted GO |
BP | GO:0006412 | translation | IEP | Predicted GO |
BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
MF | GO:0009055 | electron transfer activity | IEP | Predicted GO |
BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
MF | GO:0015002 | heme-copper terminal oxidase activity | IEP | Predicted GO |
CC | GO:0016592 | mediator complex | IEP | Predicted GO |
MF | GO:0016675 | oxidoreductase activity, acting on a heme group of donors | IEP | Predicted GO |
MF | GO:0016676 | oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor | IEP | Predicted GO |
BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
CC | GO:0019867 | outer membrane | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
BP | GO:0030163 | protein catabolic process | IEP | Predicted GO |
CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Predicted GO |
CC | GO:0031966 | mitochondrial membrane | IEP | Predicted GO |
CC | GO:0031967 | organelle envelope | IEP | Predicted GO |
CC | GO:0031968 | organelle outer membrane | IEP | Predicted GO |
CC | GO:0031975 | envelope | IEP | Predicted GO |
CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
CC | GO:0044422 | organelle part | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044428 | nuclear part | IEP | Predicted GO |
CC | GO:0044429 | mitochondrial part | IEP | Predicted GO |
CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
CC | GO:0046540 | U4/U6 x U5 tri-snRNP complex | IEP | Predicted GO |
BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
CC | GO:0097525 | spliceosomal snRNP complex | IEP | Predicted GO |
CC | GO:0097526 | spliceosomal tri-snRNP complex | IEP | Predicted GO |
CC | GO:0098588 | bounding membrane of organelle | IEP | Predicted GO |
CC | GO:0098805 | whole membrane | IEP | Predicted GO |
CC | GO:0120114 | Sm-like protein family complex | IEP | Predicted GO |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR027486 | Ribosomal_S10_dom | 24 | 118 |
No external refs found! |