PSME_00047252-RA


Description : (at3g47370 : 204.0) Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: Ribosomal protein S10p/S20e family protein (TAIR:AT5G62300.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p35686|rs20_orysa : 192.0) 40S ribosomal protein S20 - Oryza sativa (Rice) & (reliability: 408.0) & (original description: no original description)


Gene families : OG_42_0001666 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001666_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047252-RA
Cluster HCCA clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
115495 No alias Ribosomal protein S10p/S20e family protein 0.07 Orthogroups_2024-Update
A4A49_09412 No alias 40s ribosomal protein s20-2 0.05 Orthogroups_2024-Update
Bradi1g51650 No alias Ribosomal protein S10p/S20e family protein 0.07 Orthogroups_2024-Update
Brara.B01551.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.C01470.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Brara.I00689.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Brara.J00726.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Cre16.g660150 No alias Ribosomal protein S10p/S20e family protein 0.1 Orthogroups_2024-Update
Glyma.03G142200 No alias Ribosomal protein S10p/S20e family protein 0.04 Orthogroups_2024-Update
Glyma.03G142300 No alias Ribosomal protein S10p/S20e family protein 0.09 Orthogroups_2024-Update
Glyma.11G002400 No alias Ribosomal protein S10p/S20e family protein 0.05 Orthogroups_2024-Update
Glyma.19G145000 No alias Ribosomal protein S10p/S20e family protein 0.02 Orthogroups_2024-Update
Glyma.19G145100 No alias Ribosomal protein S10p/S20e family protein 0.04 Orthogroups_2024-Update
HORVU7Hr1G028050.5 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
MA_10429759g0010 No alias (at5g62300 : 200.0) Ribosomal protein S10p/S20e family... 0.04 Orthogroups_2024-Update
Mp2g09440.1 No alias component RPS20 of SSU proteome 0.05 Orthogroups_2024-Update
Potri.012G128300 No alias Ribosomal protein S10p/S20e family protein 0.06 Orthogroups_2024-Update
Pp1s257_105V6 No alias 40s ribosomal protein 0.11 Orthogroups_2024-Update
Pp1s271_9V6 No alias 40s ribosomal protein 0.06 Orthogroups_2024-Update
Seita.4G023300.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Seita.9G468800.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Sobic.001G436200.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Sobic.010G023900.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Solyc01g096590 No alias ribosomal protein S10p/S20e family protein 0.04 Orthogroups_2024-Update
Sopen00g005660 No alias Ribosomal protein S10p/S20e 0.07 Orthogroups_2024-Update
Sopen01g040320 No alias Ribosomal protein S10p/S20e 0.11 Orthogroups_2024-Update
evm.model.contig_560.7 No alias (at3g47370 : 151.0) Ribosomal protein S10p/S20e family... 0.1 Orthogroups_2024-Update
evm.model.tig00000842.28 No alias (p35686|rs20_orysa : 147.0) 40S ribosomal protein S20 -... 0.1 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004129 cytochrome-c oxidase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005740 mitochondrial envelope IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Predicted GO
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031967 organelle envelope IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031975 envelope IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 24 118
No external refs found!