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  5. PSME_00047771-RA

PSME_00047771-RA


Description : (at2g40930 : 295.0) Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation.; ubiquitin-specific protease 5 (UBP5); CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin-specific peptidase, DUSP domain (InterPro:IPR006615), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 9 (TAIR:AT4G10570.1); Has 10784 Blast hits to 7330 proteins in 261 species: Archae - 0; Bacteria - 2; Metazoa - 5578; Fungi - 1854; Plants - 1330; Viruses - 10; Other Eukaryotes - 2010 (source: NCBI BLink). & (reliability: 570.0) & (original description: no original description)


Gene families : OG_42_0001186 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001186_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047771-RA
Cluster HCCA clusters: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
Brara.J01496.1 No alias deubiquitinase *(UBP5/8-11) 0.02 Orthogroups_2024-Update
Glyma.19G126500 No alias ubiquitin-specific protease 5 0.03 Orthogroups_2024-Update
Mp3g14190.1 No alias deubiquitinase (UBP5|8-11) 0.03 Orthogroups_2024-Update
Sobic.001G263600.1 No alias deubiquitinase *(UBP5/8-11) 0.03 Orthogroups_2024-Update
Sopen09g012740 No alias Ubiquitin carboxyl-terminal hydrolase 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0016579 protein deubiquitination IEA InterProScan predictions
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 106 315
No external refs found!