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  5. PSME_00047880-RA

PSME_00047880-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000609 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000609_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00047880-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
A4A49_21428 No alias transcription factor fer-like iron deficiency-induced... 0.03 Orthogroups_2024-Update
At2g28160 No alias Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED... 0.02 Orthogroups_2024-Update
Bradi5g01900 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Brara.D01683.1 No alias transcriptional regulator *(FIT) of iron homeostasis &... 0.03 Orthogroups_2024-Update
Brara.G01353.1 No alias transcriptional regulator *(FIT) of iron homeostasis &... 0.02 Orthogroups_2024-Update
GRMZM2G119823 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G066100.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
HORVU2Hr1G068960.4 No alias transcriptional regulator *(FIT) of iron homeostasis &... 0.03 Orthogroups_2024-Update
HORVU3Hr1G005500.6 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
HORVU3Hr1G005550.1 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU4Hr1G087610.1 No alias bHLH-type transcription factor 0.02 Orthogroups_2024-Update
MA_196213g0010 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00012853-RA No alias (at2g16910 : 88.2) Encodes a basic helix-loop helix... 0.04 Orthogroups_2024-Update
PSME_00048166-RA No alias (at2g16910 : 116.0) Encodes a basic helix-loop helix... 0.04 Orthogroups_2024-Update
Seita.1G155800.1 No alias bHLH-type transcription factor 0.02 Orthogroups_2024-Update
Sopen07g006930 No alias Helix-loop-helix DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 22 49
No external refs found!