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Description : (at5g12330 : 151.0) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.; LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Protein of unknown function DUF702 (InterPro:IPR007818), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2). & (reliability: 302.0) & (original description: no original description)
Gene families : OG_42_0000655 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000655_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00049085-RA | |
| Cluster | HCCA clusters: Cluster_14 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At2g18120 | No alias | Protein SHI RELATED SEQUENCE 4... | 0.03 | Orthogroups_2024-Update | |
| Brara.D00469.1 | No alias | SRS-type transcription factor | 0.02 | Orthogroups_2024-Update | |
| Glyma.16G132100 | No alias | SHI-related sequence 7 | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G056760.3 | No alias | SRS-type transcription factor | 0.02 | Orthogroups_2024-Update | |
| Potri.001G027700 | No alias | Lateral root primordium (LRP) protein-related | 0.02 | Orthogroups_2024-Update | |
| Potri.002G028500 | No alias | SHI-related sequence 5 | 0.02 | Orthogroups_2024-Update | |
| Seita.3G259600.1 | No alias | SRS-type transcription factor | 0.04 | Orthogroups_2024-Update | |
| Sobic.002G274500.1 | No alias | SRS-type transcription factor | 0.04 | Orthogroups_2024-Update | |
| Solyc02g062400 | No alias | expression of terpenoids 1 | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004601 | peroxidase activity | IEP | Predicted GO |
| MF | GO:0004857 | enzyme inhibitor activity | IEP | Predicted GO |
| BP | GO:0006950 | response to stress | IEP | Predicted GO |
| BP | GO:0006979 | response to oxidative stress | IEP | Predicted GO |
| MF | GO:0016209 | antioxidant activity | IEP | Predicted GO |
| MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | IEP | Predicted GO |
| MF | GO:0020037 | heme binding | IEP | Predicted GO |
| MF | GO:0030234 | enzyme regulator activity | IEP | Predicted GO |
| MF | GO:0046906 | tetrapyrrole binding | IEP | Predicted GO |
| BP | GO:0050896 | response to stimulus | IEP | Predicted GO |
| BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |