Description : (at3g26740 : 96.3) transcripts are differentially regulated at the level of mRNA stability at different times of day controlled by the circadian clock. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.; CCR-like (CCL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light regulated Lir1 (InterPro:IPR009856); Has 69 Blast hits to 69 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 192.6) & (original description: no original description)
Gene families : OG_42_0007858 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007858_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00049784-RA | |
Cluster | HCCA clusters: Cluster_7 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Sopen09g034980 | No alias | Light regulated protein Lir1 | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0009507 | chloroplast | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000278 | mitotic cell cycle | IEP | Predicted GO |
CC | GO:0000775 | chromosome, centromeric region | IEP | Predicted GO |
MF | GO:0003729 | mRNA binding | IEP | Predicted GO |
MF | GO:0004417 | hydroxyethylthiazole kinase activity | IEP | Predicted GO |
MF | GO:0004866 | endopeptidase inhibitor activity | IEP | Predicted GO |
MF | GO:0004867 | serine-type endopeptidase inhibitor activity | IEP | Predicted GO |
MF | GO:0005509 | calcium ion binding | IEP | Predicted GO |
CC | GO:0005779 | integral component of peroxisomal membrane | IEP | Predicted GO |
CC | GO:0005849 | mRNA cleavage factor complex | IEP | Predicted GO |
CC | GO:0005875 | microtubule associated complex | IEP | Predicted GO |
CC | GO:0005956 | protein kinase CK2 complex | IEP | Predicted GO |
BP | GO:0006378 | mRNA polyadenylation | IEP | Predicted GO |
BP | GO:0006766 | vitamin metabolic process | IEP | Predicted GO |
BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Predicted GO |
BP | GO:0006772 | thiamine metabolic process | IEP | Predicted GO |
BP | GO:0007034 | vacuolar transport | IEP | Predicted GO |
BP | GO:0007049 | cell cycle | IEP | Predicted GO |
BP | GO:0009110 | vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0009228 | thiamine biosynthetic process | IEP | Predicted GO |
CC | GO:0009521 | photosystem | IEP | Predicted GO |
CC | GO:0009522 | photosystem I | IEP | Predicted GO |
CC | GO:0009523 | photosystem II | IEP | Predicted GO |
BP | GO:0009611 | response to wounding | IEP | Predicted GO |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Predicted GO |
BP | GO:0010207 | photosystem II assembly | IEP | Predicted GO |
BP | GO:0015979 | photosynthesis | IEP | Predicted GO |
CC | GO:0016272 | prefoldin complex | IEP | Predicted GO |
BP | GO:0016559 | peroxisome fission | IEP | Predicted GO |
MF | GO:0019207 | kinase regulator activity | IEP | Predicted GO |
BP | GO:0019725 | cellular homeostasis | IEP | Predicted GO |
MF | GO:0019887 | protein kinase regulator activity | IEP | Predicted GO |
CC | GO:0019898 | extrinsic component of membrane | IEP | Predicted GO |
MF | GO:0030234 | enzyme regulator activity | IEP | Predicted GO |
CC | GO:0030286 | dynein complex | IEP | Predicted GO |
MF | GO:0030414 | peptidase inhibitor activity | IEP | Predicted GO |
BP | GO:0031123 | RNA 3'-end processing | IEP | Predicted GO |
BP | GO:0031124 | mRNA 3'-end processing | IEP | Predicted GO |
CC | GO:0031231 | intrinsic component of peroxisomal membrane | IEP | Predicted GO |
CC | GO:0031300 | intrinsic component of organelle membrane | IEP | Predicted GO |
CC | GO:0031301 | integral component of organelle membrane | IEP | Predicted GO |
CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
CC | GO:0034357 | photosynthetic membrane | IEP | Predicted GO |
BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0042592 | homeostatic process | IEP | Predicted GO |
CC | GO:0042651 | thylakoid membrane | IEP | Predicted GO |
BP | GO:0042723 | thiamine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0042724 | thiamine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
CC | GO:0044422 | organelle part | IEP | Predicted GO |
CC | GO:0044425 | membrane part | IEP | Predicted GO |
CC | GO:0044436 | thylakoid part | IEP | Predicted GO |
CC | GO:0044438 | microbody part | IEP | Predicted GO |
CC | GO:0044439 | peroxisomal part | IEP | Predicted GO |
CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
BP | GO:0045454 | cell redox homeostasis | IEP | Predicted GO |
BP | GO:0048285 | organelle fission | IEP | Predicted GO |
MF | GO:0061134 | peptidase regulator activity | IEP | Predicted GO |
MF | GO:0061135 | endopeptidase regulator activity | IEP | Predicted GO |
BP | GO:0065008 | regulation of biological quality | IEP | Predicted GO |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Predicted GO |
CC | GO:0098687 | chromosomal region | IEP | Predicted GO |
CC | GO:0098796 | membrane protein complex | IEP | Predicted GO |
CC | GO:1902494 | catalytic complex | IEP | Predicted GO |
CC | GO:1990204 | oxidoreductase complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR009856 | Lir1 | 1 | 128 |
No external refs found! |