Solyc02g071150

Description : Programmed cell death protein 5 (AHRD V3.3 *** W9RM62_9ROSA)

Gene families : OG_42_0005829 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005829_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc02g071150
Cluster	HCCA clusters: Cluster_177

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bradi2g17790	No alias	double-stranded DNA-binding family protein	0.02	Orthogroups_2024-Update
MA_20595g0010	No alias	(at1g29850 : 144.0) double-stranded DNA-binding family...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000439	transcription factor TFIIH core complex	IEP	Predicted GO
CC	GO:0005667	transcription factor complex	IEP	Predicted GO
BP	GO:0006281	DNA repair	IEP	Predicted GO
BP	GO:0006289	nucleotide-excision repair	IEP	Predicted GO
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Predicted GO
BP	GO:0033554	cellular response to stress	IEP	Predicted GO
CC	GO:0044428	nuclear part	IEP	Predicted GO
CC	GO:0044798	nuclear transcription factor complex	IEP	Predicted GO
BP	GO:0051716	cellular response to stimulus	IEP	Predicted GO
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002836	PDCD5-like	9	120

External Links

No external refs found!