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  5. PSME_00050387-RA

PSME_00050387-RA


Description : (original description: no original description)


Gene families : OG_42_0001058 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00050387-RA
Cluster HCCA clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
139397 No alias 60S acidic ribosomal protein family 0.1 Orthogroups_2024-Update
At2g27710 No alias AT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3] 0.07 Orthogroups_2024-Update
At2g27720 No alias 60S acidic ribosomal protein family... 0.04 Orthogroups_2024-Update
At3g44590 No alias Acidic ribosomal protein P2-like... 0.06 Orthogroups_2024-Update
Bradi2g23830 No alias 60S acidic ribosomal protein family 0.05 Orthogroups_2024-Update
Bradi5g09212 No alias 60S acidic ribosomal protein family 0.11 Orthogroups_2024-Update
Bradi5g09217 No alias 60S acidic ribosomal protein family 0.12 Orthogroups_2024-Update
Brara.C02416.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.D01652.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.2 Orthogroups_2024-Update
Brara.G01325.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.17 Orthogroups_2024-Update
Cre02.g143050 No alias 60S acidic ribosomal protein family 0.19 Orthogroups_2024-Update
GRMZM2G075630 No alias 60S acidic ribosomal protein family 0.09 Orthogroups_2024-Update
GRMZM2G102891 No alias 60S acidic ribosomal protein family 0.1 Orthogroups_2024-Update
GRMZM2G105712 No alias 60S acidic ribosomal protein family 0.03 Orthogroups_2024-Update
GRMZM2G119809 No alias 60S acidic ribosomal protein family 0.09 Orthogroups_2024-Update
Glyma.03G193100 No alias 60S acidic ribosomal protein family 0.09 Orthogroups_2024-Update
Glyma.10G067800 No alias 60S acidic ribosomal protein family 0.08 Orthogroups_2024-Update
Glyma.12G182800 No alias 60S acidic ribosomal protein family 0.13 Orthogroups_2024-Update
Glyma.13G318200 No alias 60S acidic ribosomal protein family 0.09 Orthogroups_2024-Update
Glyma.19G193200 No alias 60S acidic ribosomal protein family 0.08 Orthogroups_2024-Update
Glyma.U031221 No alias 60S acidic ribosomal protein family 0.12 Orthogroups_2024-Update
HORVU1Hr1G073640.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
LOC_Os01g09510 No alias 60S acidic ribosomal protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g37330 No alias 60S acidic ribosomal protein, putative, expressed 0.06 Orthogroups_2024-Update
Mp1g06260.1 No alias component RPP2 of LSU proteome component 0.11 Orthogroups_2024-Update
Mp1g08160.1 No alias component RPP2 of LSU proteome component 0.05 Orthogroups_2024-Update
Mp1g18620.1 No alias component RPP2 of LSU proteome component 0.02 Orthogroups_2024-Update
Potri.004G185800 No alias 60S acidic ribosomal protein family 0.07 Orthogroups_2024-Update
Potri.009G146200 No alias 60S acidic ribosomal protein family 0.04 Orthogroups_2024-Update
Pp1s14_289V6 No alias 60s acidic ribosomal protein 0.2 Orthogroups_2024-Update
Pp1s21_165V6 No alias 60s acidic ribosomal protein 0.23 Orthogroups_2024-Update
Pp1s30_261V6 No alias 60s acidic ribosomal protein 0.18 Orthogroups_2024-Update
Pp1s409_34V6 No alias 60s acidic ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s51_319V6 No alias 60s acidic ribosomal protein 0.24 Orthogroups_2024-Update
Seita.3G224100.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Seita.6G192700.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Seita.7G089200.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Sobic.006G067800.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Sobic.006G260400.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Sobic.009G242300.3 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Solyc06g074430 No alias 60s acidic ribosomal protein-like protein (AHRD V3.3 ***... 0.17 Orthogroups_2024-Update
Solyc11g067100 No alias 60s acidic ribosomal family protein (AHRD V3.3 *** A9PCM7_POPTR) 0.13 Orthogroups_2024-Update
Sopen01g004990 No alias 60s Acidic ribosomal protein 0.11 Orthogroups_2024-Update
Sopen06g030910 No alias 60s Acidic ribosomal protein 0.2 Orthogroups_2024-Update
Sopen11g026810 No alias 60s Acidic ribosomal protein 0.07 Orthogroups_2024-Update
evm.model.contig_2346.3 No alias no hits & (original description: no original description) 0.12 Orthogroups_2024-Update
evm.model.contig_3407.5 No alias no hits & (original description: no original description) 0.21 Orthogroups_2024-Update
evm.model.tig00020830.75 No alias no hits & (original description: no original description) 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004129 cytochrome-c oxidase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005740 mitochondrial envelope IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
CC GO:0016272 prefoldin complex IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Predicted GO
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0031967 organelle envelope IEP Predicted GO
CC GO:0031975 envelope IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!