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- Pseudotsuga menziesii
- Sequence
- PSME_00051256-RA
PSME_00051256-RA
Description : (at3g01470 : 133.0) Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development.; homeobox 1 (HB-1); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, transcription activator activity, protein homodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress, response to blue light, positive regulation of transcription, regulation of transcription, DNA-dependent, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: stem, fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 16 (TAIR:AT4G40060.1); Has 12515 Blast hits to 12478 proteins in 547 species: Archae - 0; Bacteria - 0; Metazoa - 9969; Fungi - 258; Plants - 2039; Viruses - 5; Other Eukaryotes - 244 (source: NCBI BLink). & (reliability: 266.0) & (original description: no original description)
Expression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | Pseudotsuga release: PSME_00051256-RA | |
| Cluster | HCCA clusters: Cluster_14 | |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
| A4A49_10256 | No alias | homeobox-leucine zipper protein hat5 | 0.02 | Orthogroups_2024-Update | |
| Pp1s65_52V6 | No alias | af402605_1homeodomain leucine zipper protein hdz2 | 0.04 | Orthogroups_2024-Update | |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003676 | nucleic acid binding | None | Extended |
| MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEA | InterProScan predictions |
| MF | GO:0005488 | binding | None | Extended |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | InterProScan predictions |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0009889 | regulation of biosynthetic process | None | Extended |
| BP | GO:0010468 | regulation of gene expression | None | Extended |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | None | Extended |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | None | Extended |
| BP | GO:0019222 | regulation of metabolic process | None | Extended |
| BP | GO:0031323 | regulation of cellular metabolic process | None | Extended |
| BP | GO:0031326 | regulation of cellular biosynthetic process | None | Extended |
| MF | GO:0043565 | sequence-specific DNA binding | IEA | InterProScan predictions |
| BP | GO:0050789 | regulation of biological process | None | Extended |
| BP | GO:0050794 | regulation of cellular process | None | Extended |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | None | Extended |
| BP | GO:0051252 | regulation of RNA metabolic process | None | Extended |
| BP | GO:0060255 | regulation of macromolecule metabolic process | None | Extended |
| BP | GO:0065007 | biological regulation | None | Extended |
| BP | GO:0080090 | regulation of primary metabolic process | None | Extended |
| MF | GO:0097159 | organic cyclic compound binding | None | Extended |
| MF | GO:0140110 | transcription regulator activity | None | Extended |
| MF | GO:1901363 | heterocyclic compound binding | None | Extended |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | None | Extended |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | None | Extended |
| BP | GO:2001141 | regulation of RNA biosynthetic process | None | Extended |
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0004568 | chitinase activity | IEP | Predicted GO |
| BP | GO:0006022 | aminoglycan metabolic process | IEP | Predicted GO |
| BP | GO:0006026 | aminoglycan catabolic process | IEP | Predicted GO |
| BP | GO:0006030 | chitin metabolic process | IEP | Predicted GO |
| BP | GO:0006032 | chitin catabolic process | IEP | Predicted GO |
| BP | GO:0006040 | amino sugar metabolic process | IEP | Predicted GO |
| MF | GO:0016758 | transferase activity, transferring hexosyl groups | IEP | Predicted GO |
| BP | GO:0016998 | cell wall macromolecule catabolic process | IEP | Predicted GO |
| BP | GO:0042737 | drug catabolic process | IEP | Predicted GO |
| BP | GO:0044036 | cell wall macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0046348 | amino sugar catabolic process | IEP | Predicted GO |
| BP | GO:1901071 | glucosamine-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:1901072 | glucosamine-containing compound catabolic process | IEP | Predicted GO |
| BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
| IPR001356 | Homeobox_dom | 66 | 119 |
| IPR003106 | Leu_zip_homeo | 122 | 162 |
