PSME_00051567-RA


Description : (at3g16720 : 108.0) RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations.; TOXICOS EN LEVADURA 2 (ATL2); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin, defense response; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G15975.1); Has 9711 Blast hits to 9689 proteins in 300 species: Archae - 0; Bacteria - 2; Metazoa - 2552; Fungi - 813; Plants - 5050; Viruses - 85; Other Eukaryotes - 1209 (source: NCBI BLink). & (q9lrb7|el5_orysa : 80.9) E3 ubiquitin-protein ligase EL5 (EC 6.3.2.-) - Oryza sativa (Rice) & (reliability: 216.0) & (original description: no original description)


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00051567-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
137213 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
A4A49_11165 No alias ring-h2 finger protein atl8 0.02 Orthogroups_2024-Update
A4A49_18116 No alias ring-h2 finger protein atl78 0.01 Orthogroups_2024-Update
A4A49_27114 No alias ring-h2 finger protein atl54 0.02 Orthogroups_2024-Update
A4A49_29196 No alias ring-h2 finger protein atl72 0.02 Orthogroups_2024-Update
A4A49_36505 No alias e3 ubiquitin-protein ligase atl6 0.01 Orthogroups_2024-Update
A4A49_36993 No alias ring-h2 finger protein atl52 0.02 Orthogroups_2024-Update
At1g35330 No alias RING/U-box superfamily protein [Source:TAIR;Acc:AT1G35330] 0.01 Orthogroups_2024-Update
At1g72200 No alias RING-H2 finger protein ATL11... 0.03 Orthogroups_2024-Update
At2g35000 No alias E3 ubiquitin-protein ligase ATL9... 0.02 Orthogroups_2024-Update
At2g42350 No alias RING-H2 finger protein ATL40... 0.02 Orthogroups_2024-Update
At3g14320 No alias Putative RING-H2 finger protein ATL61... 0.02 Orthogroups_2024-Update
At4g09100 No alias RING-H2 finger protein ATL39... 0.02 Orthogroups_2024-Update
At4g10150 No alias RING-H2 finger protein ATL7... 0.02 Orthogroups_2024-Update
At5g01880 No alias RING-H2 finger protein ATL74... 0.01 Orthogroups_2024-Update
At5g07040 No alias Putative RING-H2 finger protein ATL69... 0.02 Orthogroups_2024-Update
At5g10380 No alias E3 ubiquitin-protein ligase RING1... 0.03 Orthogroups_2024-Update
At5g17600 No alias RING-H2 finger protein ATL52... 0.01 Orthogroups_2024-Update
At5g41450 No alias RING/U-box superfamily protein... 0.01 Orthogroups_2024-Update
Bradi1g39010 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Bradi2g06880 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Bradi3g32700 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g13960 No alias RING/U-box superfamily protein 0.1 Orthogroups_2024-Update
Bradi4g37430 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Bradi5g19490 No alias RING-H2 finger A3A 0.03 Orthogroups_2024-Update
Bradi5g19960 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Brara.A02910.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.A03044.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Brara.A03446.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.B02534.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.D02177.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E00161.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.E00283.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E00442.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E01533.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Brara.E02317.1 No alias regulatory ubiquitin-protein ligase *(PRU2) &... 0.01 Orthogroups_2024-Update
Brara.E02690.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E03386.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.F01484.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Brara.G03107.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.H02311.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.I02510.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Brara.I03307.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.I04147.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.J02316.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Cre11.g476250 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.01 Orthogroups_2024-Update
Cre16.g651400 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G004519 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G031280 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G041549 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G146847 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G478553 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G480106 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Glyma.01G017300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G210400 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G210700 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G203400 No alias RING/U-box superfamily protein 0.12 Orthogroups_2024-Update
Glyma.03G239900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G188900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G150400 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.06G284600 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Glyma.08G177000 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G042400 No alias TOXICOS EN LEVADURA 2 0.02 Orthogroups_2024-Update
Glyma.09G067900 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Glyma.10G121100 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Glyma.10G289100 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.11G143350 No alias TOXICOS EN LEVADURA 2 0.01 Orthogroups_2024-Update
Glyma.11G172300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G242500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G047300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G208600 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G108500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G232800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G177900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.17G050900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G025700 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.19G212000 No alias AtL5 0.02 Orthogroups_2024-Update
HORVU0Hr1G016510.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU1Hr1G053130.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU1Hr1G074230.1 No alias Unknown function 0.06 Orthogroups_2024-Update
HORVU2Hr1G074210.1 No alias regulatory ubiquitin-protein ligase *(PRU2) 0.04 Orthogroups_2024-Update
HORVU2Hr1G077490.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
HORVU2Hr1G104860.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU2Hr1G105980.2 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU5Hr1G074300.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
HORVU5Hr1G082830.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G087960.1 No alias Unknown function 0.01 Orthogroups_2024-Update
HORVU5Hr1G121280.7 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
HORVU7Hr1G042940.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G121570.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
LOC_Os01g11500 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os01g11520 No alias RING-H2 finger protein, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os01g53500 No alias RING-H2 finger protein ATL2M, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g55110 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g61470 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os01g64620 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os04g34230 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g50100 No alias RING-H2 finger protein ATL5G, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os05g39940 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g45060 No alias RING-H2 finger protein ATL2M, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g11450 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g16060 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
MA_101154g0010 No alias (at3g16720 : 130.0) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
MA_12352g0010 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
MA_12363g0010 No alias (at1g72310 : 126.0) Encodes a putative RING-H2 zinc... 0.04 Orthogroups_2024-Update
MA_124750g0010 No alias (at5g01880 : 92.8) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_226198g0010 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
MA_25345g0010 No alias (at1g49230 : 107.0) RING/U-box superfamily protein;... 0.05 Orthogroups_2024-Update
MA_2679g0010 No alias (at3g16720 : 111.0) RING-H2 protein induced after... 0.01 Orthogroups_2024-Update
MA_31462g0010 No alias (at1g49220 : 101.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_37578g0010 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
MA_38494g0010 No alias (at1g49230 : 119.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_634100g0010 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
MA_6697g0010 No alias (at1g72310 : 120.0) Encodes a putative RING-H2 zinc... 0.01 Orthogroups_2024-Update
MA_81046g0010 No alias (at1g49230 : 127.0) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update
MA_96368g0010 No alias (at5g17600 : 180.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00003015-RA No alias (at3g05200 : 122.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
PSME_00034763-RA No alias (at5g05280 : 85.1) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update
Potri.001G162000 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.001G279200 No alias TOXICOS EN LEVADURA 2 0.02 Orthogroups_2024-Update
Potri.001G400600 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.002G101800 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.003G073300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.006G144200 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.006G201500 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.007G057300 No alias RING-H2 finger A3A 0.01 Orthogroups_2024-Update
Potri.008G018900 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.008G219200 No alias TOXICOS EN LEVADURA 2 0.01 Orthogroups_2024-Update
Potri.009G073900 No alias TOXICOS EN LEVADURA 2 0.02 Orthogroups_2024-Update
Potri.009G110000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G243200 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.010G243300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.012G003900 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.013G157000 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.016G067900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.016G136200 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.019G010500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.019G010600 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.019G091400 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Pp1s71_162V6 No alias ring finger 0.01 Orthogroups_2024-Update
Seita.1G279400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.1G306600.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.1G379200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Seita.2G390800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.3G302000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.5G309700.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Seita.7G095300.1 No alias regulatory ubiquitin-protein ligase *(PRU2) &... 0.04 Orthogroups_2024-Update
Seita.7G110600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.7G218600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.002G232800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.003G147301.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G109900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.08 Orthogroups_2024-Update
Sobic.004G181300.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.004G187800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G283400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.004G301300.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.004G305000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Sobic.005G036400.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.007G165000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Sobic.008G175200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G110400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G071000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Solyc04g009780 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061FQW5_THECC) 0.02 Orthogroups_2024-Update
Solyc04g074820 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc04g082690 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G20823.1) 0.03 Orthogroups_2024-Update
Solyc06g051250 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.01 Orthogroups_2024-Update
Solyc10g011880 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G61550.1) 0.02 Orthogroups_2024-Update
Solyc10g081790 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G06490.1) 0.02 Orthogroups_2024-Update
Solyc11g007530 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061DVK5_THECC) 0.05 Orthogroups_2024-Update
Solyc12g087840 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.01 Orthogroups_2024-Update
Sopen02g031720 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen03g031440 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen06g022560 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen12g024180 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006094 gluconeogenesis IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001272 PEP_carboxykinase_ATP 2 56
IPR001841 Znf_RING 199 242
No external refs found!