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  5. PSME_00052715-RA

PSME_00052715-RA


Description : (p28002|comt1_medsa : 235.0) Caffeic acid 3-O-methyltransferase (EC 2.1.1.68) (S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase) (COMT) (CAOMT) - Medicago sativa (Alfalfa) & (at5g54160 : 231.0) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3í-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3í-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase; O-methyltransferase 1 (OMT1); FUNCTIONS IN: myricetin 3'-O-methyltransferase activity, quercetin 3-O-methyltransferase activity, caffeate O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process, flavonol biosynthetic process; LOCATED IN: cytosol, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G77520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 462.0) & (original description: no original description)


Gene families : OG_42_0000016 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000016_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00052715-RA
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Bradi4g28057 No alias O-methyltransferase family protein 0.02 Orthogroups_2024-Update
Brara.F01513.1 No alias EC_2.1 transferase transferring one-carbon group 0.02 Orthogroups_2024-Update
Brara.F03756.1 No alias EC_2.1 transferase transferring one-carbon group 0.03 Orthogroups_2024-Update
Brara.G02172.1 No alias EC_2.1 transferase transferring one-carbon group 0.03 Orthogroups_2024-Update
Brara.G03470.1 No alias EC_2.1 transferase transferring one-carbon group 0.02 Orthogroups_2024-Update
Brara.H02296.1 No alias EC_2.1 transferase transferring one-carbon group 0.02 Orthogroups_2024-Update
Brara.H02297.1 No alias EC_2.1 transferase transferring one-carbon group 0.03 Orthogroups_2024-Update
Brara.J00896.1 No alias caffeic acid O-methyltransferase *(COMT) & EC_2.1... 0.03 Orthogroups_2024-Update
GRMZM2G082007 No alias O-methyltransferase family protein 0.02 Orthogroups_2024-Update
GRMZM2G100754 No alias O-methyltransferase family protein 0.02 Orthogroups_2024-Update
GRMZM2G106172 No alias O-methyltransferase family protein 0.02 Orthogroups_2024-Update
Glyma.02G233100 No alias O-methyltransferase 1 0.03 Orthogroups_2024-Update
Glyma.06G137300 No alias O-methyltransferase 1 0.04 Orthogroups_2024-Update
Glyma.06G286700 No alias O-methyltransferase family protein 0.03 Orthogroups_2024-Update
Glyma.06G295700 No alias O-methyltransferase 1 0.03 Orthogroups_2024-Update
Glyma.08G248000 No alias O-methyltransferase family protein 0.03 Orthogroups_2024-Update
Glyma.12G109800 No alias O-methyltransferase 1 0.02 Orthogroups_2024-Update
HORVU3Hr1G110170.3 No alias EC_2.1 transferase transferring one-carbon group 0.02 Orthogroups_2024-Update
HORVU6Hr1G000040.1 No alias caffeic acid O-methyltransferase *(COMT) & EC_2.1... 0.02 Orthogroups_2024-Update
HORVU6Hr1G090510.2 No alias EC_2.1 transferase transferring one-carbon group 0.02 Orthogroups_2024-Update
Kfl00158_0170 kfl00158_0170_v1.... (at5g54160 : 162.0) A caffeic acid/5-hydroxyferulic acid... 0.01 Orthogroups_2024-Update
LOC_Os12g25870 No alias O-methyltransferase, putative, expressed 0.02 Orthogroups_2024-Update
MA_10375504g0010 No alias (at5g54160 : 145.0) A caffeic acid/5-hydroxyferulic acid... 0.03 Orthogroups_2024-Update
MA_165197g0010 No alias (q8w013|comt1_catro : 372.0) Caffeic acid... 0.03 Orthogroups_2024-Update
MA_1665780g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_5226589g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_76956g0010 No alias (q9fqy8|comt1_capan : 399.0) Caffeic acid... 0.03 Orthogroups_2024-Update
MA_8268940g0010 No alias (q8w013|comt1_catro : 180.0) Caffeic acid... 0.03 Orthogroups_2024-Update
MA_86945g0010 No alias (at5g54160 : 94.7) A caffeic acid/5-hydroxyferulic acid... 0.05 Orthogroups_2024-Update
MA_9917746g0010 No alias (q9fqy8|comt1_capan : 178.0) Caffeic acid... 0.04 Orthogroups_2024-Update
PSME_00008876-RA No alias (p93324|chomt_medsa : 161.0) Isoliquiritigenin... 0.02 Orthogroups_2024-Update
PSME_00015141-RA No alias (q8w013|comt1_catro : 194.0) Caffeic acid... 0.04 Orthogroups_2024-Update
PSME_00018015-RA No alias (q9fqy8|comt1_capan : 332.0) Caffeic acid... 0.03 Orthogroups_2024-Update
PSME_00023722-RA No alias (p28002|comt1_medsa : 233.0) Caffeic acid... 0.04 Orthogroups_2024-Update
PSME_00037662-RA No alias (q8w013|comt1_catro : 274.0) Caffeic acid... 0.04 Orthogroups_2024-Update
PSME_00041946-RA No alias (o82054|comt1_sacof : 182.0) Caffeic acid... 0.02 Orthogroups_2024-Update
PSME_00045308-RA No alias (p28002|comt1_medsa : 243.0) Caffeic acid... 0.05 Orthogroups_2024-Update
PSME_00051407-RA No alias (p28002|comt1_medsa : 208.0) Caffeic acid... 0.02 Orthogroups_2024-Update
PSME_00051481-RA No alias (q8w013|comt1_catro : 234.0) Caffeic acid... 0.04 Orthogroups_2024-Update
PSME_00051686-RA No alias (p28002|comt1_medsa : 274.0) Caffeic acid... 0.02 Orthogroups_2024-Update
PSME_00052154-RA No alias (q8w013|comt1_catro : 255.0) Caffeic acid... 0.06 Orthogroups_2024-Update
PSME_00053129-RA No alias (q8w013|comt1_catro : 265.0) Caffeic acid... 0.04 Orthogroups_2024-Update
Potri.001G451100 No alias O-methyltransferase 1 0.02 Orthogroups_2024-Update
Potri.013G143800 No alias O-methyltransferase family protein 0.02 Orthogroups_2024-Update
Seita.1G045400.1 No alias EC_2.1 transferase transferring one-carbon group 0.02 Orthogroups_2024-Update
Seita.5G331100.1 No alias EC_2.1 transferase transferring one-carbon group 0.03 Orthogroups_2024-Update
Seita.6G055900.1 No alias caffeic acid O-methyltransferase *(COMT) & EC_2.1... 0.02 Orthogroups_2024-Update
Sobic.001G354400.1 No alias EC_2.1 transferase transferring one-carbon group 0.03 Orthogroups_2024-Update
Sobic.007G059100.1 No alias EC_2.1 transferase transferring one-carbon group 0.04 Orthogroups_2024-Update
Sobic.007G074800.1 No alias EC_2.1 transferase transferring one-carbon group 0.03 Orthogroups_2024-Update
Sobic.010G230800.1 No alias EC_2.1 transferase transferring one-carbon group 0.02 Orthogroups_2024-Update
Sobic.010G231000.2 No alias EC_2.1 transferase transferring one-carbon group 0.02 Orthogroups_2024-Update
Solyc06g060200 No alias Caffeic acid O-methyltransferase (AHRD V3.3 *-* Q2HTB3_MEDTR) 0.02 Orthogroups_2024-Update
Solyc06g064510 No alias O-methyltransferase (AHRD V3.3 *** A0A1B4Z3W3_9ROSA) 0.03 Orthogroups_2024-Update
Sopen01g053940 No alias O-methyltransferase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008171 O-methyltransferase activity IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR012967 Plant_MeTrfase_dimerisation 60 115
IPR001077 O_MeTrfase_2 176 384
No external refs found!