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  5. PSME_00052809-RA

PSME_00052809-RA


Description : (at5g20630 : 236.0) Encodes a germin-like protein. Its transcripts are more abundant in RNA from leaves collected in the evening, suggesting some kind of circadian regulation.; germin 3 (GER3); INVOLVED IN: response to cold, peptidyl-cysteine S-nitrosylation; LOCATED IN: extracellular matrix, apoplast, cell wall, nucleus, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 1 (TAIR:AT1G72610.1); Has 1486 Blast hits to 1484 proteins in 101 species: Archae - 0; Bacteria - 34; Metazoa - 0; Fungi - 23; Plants - 1414; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). & (o04011|abp20_prupe : 230.0) Auxin-binding protein ABP20 precursor - Prunus persica (Peach) & (reliability: 472.0) & (original description: no original description)


Gene families : OG_42_0000022 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000022_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00052809-RA
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
227274 No alias Function unknown 0.04 Orthogroups_2024-Update
229376 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
446428 No alias RmlC-like cupins superfamily protein 0.04 Orthogroups_2024-Update
At3g10080 No alias RmlC-like cupins superfamily protein... 0.04 Orthogroups_2024-Update
Bradi2g60870 No alias germin-like protein subfamily 2 member 2 precursor 0.03 Orthogroups_2024-Update
Bradi3g44880 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G061400 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G058900 No alias RmlC-like cupins superfamily protein 0.04 Orthogroups_2024-Update
Glyma.19G059100 No alias RmlC-like cupins superfamily protein 0.04 Orthogroups_2024-Update
Glyma.19G059200 No alias RmlC-like cupins superfamily protein 0.04 Orthogroups_2024-Update
Kfl00453_0190 kfl00453_0190_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Sobic.004G148000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G066808.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G067108.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G067608.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0045735 nutrient reservoir activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
InterPro domains Description Start Stop
IPR006045 Cupin_1 60 205
No external refs found!