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PSME_00053137-RA


Description : (at3g23330 : 415.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 (TAIR:AT3G12770.1); Has 38045 Blast hits to 13879 proteins in 261 species: Archae - 0; Bacteria - 10; Metazoa - 50; Fungi - 109; Plants - 37267; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink). & (reliability: 770.0) & (original description: no original description)


Gene families : OG_42_0022449 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00053137-RA
Cluster HCCA clusters: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
MA_74881g0010 No alias (at3g12770 : 587.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 284 316
IPR032867 DYW_dom 493 571
IPR002885 Pentatricopeptide_repeat 219 248
IPR002885 Pentatricopeptide_repeat 465 488
IPR002885 Pentatricopeptide_repeat 58 84
IPR002885 Pentatricopeptide_repeat 106 132
IPR002885 Pentatricopeptide_repeat 319 365
No external refs found!