Description : (p10049|cb21_pinth : 483.0) Chlorophyll a-b binding protein type I, chloroplast precursor (CAB) (LHCP) - Pinus thunbergii (Green pine) (Japanese black pine) & (at3g27690 : 442.0) Encodes Lhcb2.4. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.; photosystem II light harvesting complex gene 2.3 (LHCB2.3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 2373 Blast hits to 2310 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2058; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink). & (reliability: 884.0) & (original description: no original description)
Gene families : OG_42_0000070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000070_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00053914-RA | |
Cluster | HCCA clusters: Cluster_12 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At1g76570 | No alias | Chlorophyll a-b binding protein 7, chloroplastic... | 0.02 | Orthogroups_2024-Update | |
Brara.K00763.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Glyma.02G080800 | No alias | light-harvesting chlorophyll-protein complex II subunit B1 | 0.03 | Orthogroups_2024-Update | |
Glyma.05G128000 | No alias | chlorophyll A/B binding protein 1 | 0.02 | Orthogroups_2024-Update | |
Glyma.08G082900 | No alias | chlorophyll A/B binding protein 1 | 0.03 | Orthogroups_2024-Update | |
Glyma.16G165200 | No alias | light-harvesting chlorophyll-protein complex II subunit B1 | 0.03 | Orthogroups_2024-Update | |
Glyma.16G165500 | No alias | light-harvesting chlorophyll-protein complex II subunit B1 | 0.03 | Orthogroups_2024-Update | |
Glyma.16G165800 | No alias | light-harvesting chlorophyll-protein complex II subunit B1 | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G082420.2 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.02 | Orthogroups_2024-Update | |
Mp7g05530.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003824 | catalytic activity | IEP | Predicted GO |
MF | GO:0004672 | protein kinase activity | IEP | Predicted GO |
MF | GO:0005506 | iron ion binding | IEP | Predicted GO |
BP | GO:0006464 | cellular protein modification process | IEP | Predicted GO |
BP | GO:0006468 | protein phosphorylation | IEP | Predicted GO |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006787 | porphyrin-containing compound catabolic process | IEP | Predicted GO |
BP | GO:0006793 | phosphorus metabolic process | IEP | Predicted GO |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0007034 | vacuolar transport | IEP | Predicted GO |
BP | GO:0015994 | chlorophyll metabolic process | IEP | Predicted GO |
BP | GO:0015996 | chlorophyll catabolic process | IEP | Predicted GO |
MF | GO:0016301 | kinase activity | IEP | Predicted GO |
BP | GO:0016310 | phosphorylation | IEP | Predicted GO |
MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016740 | transferase activity | IEP | Predicted GO |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Predicted GO |
MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Predicted GO |
BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
BP | GO:0033015 | tetrapyrrole catabolic process | IEP | Predicted GO |
BP | GO:0036211 | protein modification process | IEP | Predicted GO |
BP | GO:0042440 | pigment metabolic process | IEP | Predicted GO |
BP | GO:0043412 | macromolecule modification | IEP | Predicted GO |
BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0046149 | pigment catabolic process | IEP | Predicted GO |
MF | GO:0047746 | chlorophyllase activity | IEP | Predicted GO |
BP | GO:0051187 | cofactor catabolic process | IEP | Predicted GO |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predicted GO |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR022796 | Chloroa_b-bind | 67 | 232 |
No external refs found! |