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Description : (p10049|cb21_pinth : 389.0) Chlorophyll a-b binding protein type I, chloroplast precursor (CAB) (LHCP) - Pinus thunbergii (Green pine) (Japanese black pine) & (at3g27690 : 365.0) Encodes Lhcb2.4. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.; photosystem II light harvesting complex gene 2.3 (LHCB2.3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 2373 Blast hits to 2310 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2058; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink). & (reliability: 730.0) & (original description: no original description)
Gene families : OG_42_0000070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000070_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00054494-RA | |
| Cluster | HCCA clusters: Cluster_40 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 403333 | No alias | photosystem I light harvesting complex gene 5 | 0.02 | Orthogroups_2024-Update | |
| A4A49_14365 | No alias | chlorophyll a-b binding protein 21, chloroplastic | 0.03 | Orthogroups_2024-Update | |
| Bradi1g12130 | No alias | chlorophyll A/B binding protein 1 | 0.04 | Orthogroups_2024-Update | |
| Bradi1g23610 | No alias | photosystem I light harvesting complex gene 2 | 0.02 | Orthogroups_2024-Update | |
| Bradi2g16282 | No alias | photosystem II light harvesting complex gene B1B2 | 0.03 | Orthogroups_2024-Update | |
| Bradi4g21170 | No alias | light harvesting complex of photosystem II 5 | 0.02 | Orthogroups_2024-Update | |
| Brara.E00980.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.E00981.1 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.02 | Orthogroups_2024-Update | |
| Brara.I02349.1 | No alias | component *(LHCb5) of LHC-II complex | 0.03 | Orthogroups_2024-Update | |
| Brara.I03747.1 | No alias | component *(LHCa1) of LHC-I complex | 0.02 | Orthogroups_2024-Update | |
| Brara.J00907.1 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.02 | Orthogroups_2024-Update | |
| Brara.K00763.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Glyma.02G080800 | No alias | light-harvesting chlorophyll-protein complex II subunit B1 | 0.03 | Orthogroups_2024-Update | |
| Glyma.04G167900 | No alias | light-harvesting chlorophyll-protein complex I subunit A4 | 0.03 | Orthogroups_2024-Update | |
| Glyma.06G194900 | No alias | light-harvesting chlorophyll-protein complex I subunit A4 | 0.03 | Orthogroups_2024-Update | |
| Glyma.08G082900 | No alias | chlorophyll A/B binding protein 1 | 0.03 | Orthogroups_2024-Update | |
| Glyma.10G177200 | No alias | light harvesting complex of photosystem II 5 | 0.03 | Orthogroups_2024-Update | |
| Glyma.15G179400 | No alias | photosystem I light harvesting complex gene 6 | 0.04 | Orthogroups_2024-Update | |
| Glyma.16G016100 | No alias | photosystem I light harvesting complex gene 2 | 0.03 | Orthogroups_2024-Update | |
| Glyma.16G165200 | No alias | light-harvesting chlorophyll-protein complex II subunit B1 | 0.03 | Orthogroups_2024-Update | |
| Glyma.16G165500 | No alias | light-harvesting chlorophyll-protein complex II subunit B1 | 0.03 | Orthogroups_2024-Update | |
| Glyma.16G165800 | No alias | light-harvesting chlorophyll-protein complex II subunit B1 | 0.03 | Orthogroups_2024-Update | |
| Glyma.16G205200 | No alias | light harvesting complex of photosystem II 5 | 0.03 | Orthogroups_2024-Update | |
| Glyma.20G212900 | No alias | light harvesting complex of photosystem II 5 | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G078380.1 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G088900.2 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.02 | Orthogroups_2024-Update | |
| HORVU1Hr1G088920.3 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G089180.1 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G016850.1 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.02 | Orthogroups_2024-Update | |
| HORVU6Hr1G016880.1 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G016890.6 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.04 | Orthogroups_2024-Update | |
| HORVU6Hr1G016940.1 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.03 | Orthogroups_2024-Update | |
| Mp2g15420.1 | No alias | component LHCa1 of LHC-I complex | 0.02 | Orthogroups_2024-Update | |
| Mp7g05530.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.03 | Orthogroups_2024-Update | |
| Mp8g12010.1 | No alias | component LHCq of LHC-II complex | 0.02 | Orthogroups_2024-Update | |
| Pp1s19_13V6 | No alias | light-harvesting complex ii protein lhcb2 | 0.02 | Orthogroups_2024-Update | |
| Pp1s241_66V6 | No alias | chlorophyll a-b binding protein | 0.02 | Orthogroups_2024-Update | |
| Pp1s628_3V6 | No alias | light-harvesting complex ii protein lhcb5 | 0.02 | Orthogroups_2024-Update | |
| Seita.5G215600.1 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.04 | Orthogroups_2024-Update | |
| Sobic.002G339200.2 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0003352 | regulation of cilium movement | IEP | Predicted GO |
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003824 | catalytic activity | IEP | Predicted GO |
| MF | GO:0004089 | carbonate dehydratase activity | IEP | Predicted GO |
| MF | GO:0004474 | malate synthase activity | IEP | Predicted GO |
| MF | GO:0004672 | protein kinase activity | IEP | Predicted GO |
| BP | GO:0006081 | cellular aldehyde metabolic process | IEP | Predicted GO |
| BP | GO:0006097 | glyoxylate cycle | IEP | Predicted GO |
| BP | GO:0006464 | cellular protein modification process | IEP | Predicted GO |
| BP | GO:0006468 | protein phosphorylation | IEP | Predicted GO |
| BP | GO:0006793 | phosphorus metabolic process | IEP | Predicted GO |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006855 | drug transmembrane transport | IEP | Predicted GO |
| MF | GO:0015238 | drug transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015297 | antiporter activity | IEP | Predicted GO |
| BP | GO:0015893 | drug transport | IEP | Predicted GO |
| MF | GO:0016301 | kinase activity | IEP | Predicted GO |
| BP | GO:0016310 | phosphorylation | IEP | Predicted GO |
| MF | GO:0016740 | transferase activity | IEP | Predicted GO |
| MF | GO:0016757 | transferase activity, transferring glycosyl groups | IEP | Predicted GO |
| MF | GO:0016758 | transferase activity, transferring hexosyl groups | IEP | Predicted GO |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Predicted GO |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Predicted GO |
| MF | GO:0016836 | hydro-lyase activity | IEP | Predicted GO |
| BP | GO:0032879 | regulation of localization | IEP | Predicted GO |
| BP | GO:0032886 | regulation of microtubule-based process | IEP | Predicted GO |
| BP | GO:0036211 | protein modification process | IEP | Predicted GO |
| BP | GO:0043412 | macromolecule modification | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0046487 | glyoxylate metabolic process | IEP | Predicted GO |
| MF | GO:0046912 | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | IEP | Predicted GO |
| BP | GO:0051270 | regulation of cellular component movement | IEP | Predicted GO |
| BP | GO:0060632 | regulation of microtubule-based movement | IEP | Predicted GO |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 30 | 195 |
| No external refs found! |