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  5. PSME_00054855-RA

PSME_00054855-RA


Description : (at1g67100 : 184.0) LOB domain-containing protein 40 (LBD40); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 41 (TAIR:AT3G02550.1); Has 635 Blast hits to 634 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 635; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 368.0) & (original description: no original description)


Gene families : OG_42_0000544 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000544_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00054855-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Bradi4g16750 No alias LOB domain-containing protein 41 0.02 Orthogroups_2024-Update
Glyma.20G115700 No alias LOB domain-containing protein 42 0.05 Orthogroups_2024-Update
PSME_00037372-RA No alias (at1g67100 : 190.0) LOB domain-containing protein 40... 0.04 Orthogroups_2024-Update
PSME_00054567-RA No alias (at1g68510 : 166.0) LOB domain-containing protein 42... 0.03 Orthogroups_2024-Update
Potri.004G100100 No alias LOB domain-containing protein 41 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
InterPro domains Description Start Stop
IPR004883 LOB 2 96
No external refs found!